XLOC_001357


Basic Information

Item Value
gene id XLOC_001357
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 36424768 ~ 36472822 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003444
GACGTTCTTATGGAGTGATTGAATGTATGGAGATCTGGCGGTATTTTGAAAGTTTAAAAATGCGCTTCCAATTGCTTACAGAACAGCTTTTGAGTCGAATTAACTGAGTTTATGTGTCATATAAGTTCGTATATTGGCTAATATAGTGAGACAGCAGACGCTGAGAATACAAGGGATTCTTACTTTGTGCTAGACATCATTACTGAGCAATCTCCTCACACGCCCTCCAAATTACTGTTAGGAGCCTGTTGGTCGGCGGTGGCTCCAAGcccagagagtgagagagagagctggCTGGCAGATGGCCCACTCATGAGCCTGTCTGTGGGGGCCGACTCAGTGGAGCTGCCCTGCCCCCTCCAGAAGTACCACTTCAAGGAAAATGGGTCCTTTTCTTGGGGACTCATGTCCTCAGGCACTTGCTTGGCACCGGGTAAAAGAAGTGGCGACATACGTTCATGAGCCGCATGACTTCCAGGCAAGTCCCCC
>TCONS_00003443
GACGTTCTTATGGAGTGATTGAATGTATGGAGATCTGGCGGTATTTTGAAAGTTTAAAAATGCGCTTCCAATTGCTTACAGAACAGCTTTTGAGTCGAATTAACTGAGTTTATGTGTCATATAAGTTCGTATATTGGCTAATATAGTGAGACAGCAGACGCTGAGAATACAAGGGATTCTTACTTTGGAGCCTGTTGGTCGGCGGTGGCTCCAAGcccagagagtgagagagagagctggCTGGCAGATGGCCCACTCATGAGCCTGTCTGTGGGGGCCGACTCAGTGGAGCTGCCCTGCCCCCTCCAGAAGTACCACTTCAAGGGTCAGTGCTTTGCTGAAAATGGGTCCTTTTCTTGGGGACTCATGTCCTCAGGCACTTGCTTGGCACCGGGTAAAAGAAGTGGCGACATACGTTCATGAGCCGCATGACTTCCAGGCAAGTCCCCC
>TCONS_00002226
TGGAGATCTGGCGGTATTTTGAAAGTTTAAAAATGCGCTTCCAATTGCTTACAGAACAGCTTTTGAGTCGAATTAACTGAGTTTATGTGTCATATAAGTTCGTATATTGGCTAATATAGTGAGACAGCAGACGCTGAGAATACAAGGGATTCTTACTTTGTGCTAGACATCATTACTGAGCAATCTCCTCACACGCCCTCCAAATTACTGTTAGGAGCCTGTTGGTCGGCGGTGGCTCCAAGcccagagagtgagagagagagctggCTGGCAGATGGCCCACTCATGAGCCTGTCTGTGGGGGCCGACTCAGTGGAGCTGCCCTGCCCCCTCCAGAAGTACCACTTCAAGGGTCAGTGCTTTGCTGtGCTTTCACTAAACAAGTATATTCAGTTGAGGATACATGTCTTCTCTTCTCCACTAAGCATGCATGTGAAAGGT
>TCONS_00003445
GACGTTCTTATGGAGTGATTGAATGAGCCTGTTGGTCGGCGGTGGCTCCAAGcccagagagtgagagagagagctggCTGGCAGATGGCCCACTCATGAGCCTGTCTGTGGGGGCCGACTCAGTGGAGCTGCCCTGCCCCCTCCAGAAGTACCACTTCAAGGGTCAGTGCTTTGCTGAAAATGGGTCCTTTTCTTGGGGACTCATGTCCTCAGGCACTTGCTTGGCACCGGGTAAAAGAAGTGGCGACATACGTTCATGTAAGTGGGCCATAGTAGCAGATGGGACACTGATTGCTCTGTTGTTTACAGCTGTTTGTGTCCCTTCATGTGACTCAAACTAGCAGGAAAACAAGGCAATGTTGCACCCAAGTGCAAAAATTATTTGTGGCCCCCATTACGAATTGGGCCAAGTGCTCCAAACTGTAATGGACCTTTGGCAAAACGATCTCTTTCAATTGAAGATTGTTAGTGTGGCACTGCAGTAGATAGAATGACTGAAAATGGTTTAGAGTGAGTCTCAAAATCCATTTATGAACAAACCTTCTGCATCActccaaatgtttattaataattttcaaCAGCAAATAATCATGTTGACTGTGAATTTTTCCAAGGATATCATGATACCACATAATCTACATCTAAAAATATGCATGCTCAGAAAACACCAGAACAGTGTTGGATTTTGTTGACTTACATACTtaaattttcacaattttttgaagaatgttgaggtccagagaaataagcaattttaattGAACACTGAATTTGAGTTGAACcaaatttttaacattaaaaaaatgtatttgatttcaCGTTGTGTCATTCAAATTTACAGGCTGC
>TCONS_00003446
AGAAGAGAAAGACGTTCTTATGGAGTGATTGAATGTATGGAGATCTGGCGGTATTTTGAAAGTTTAAAAATGCGCTTCCAATTGCTTACAGAACAGCTTTTGAGTCGAATTAACTGAGTTTATGTGTCATATAAGTTCGTATATTGGCTAATATAGTGAGACAGCAGACGCTGAGAATACAAGGGATTCTTACTTTGGAGCCTGTTGGTCGGCGGTGGCTCCAAGcccagagagtgagagagagagctggCTGGCAGATGGCCCACTCATGAGCCTGTCTGTGGGGGCCGACTCAGTGGAGCTGCCCTGCCCCCTCCAGAAGTACCACTTCAAGGGTCAGTGCTTTGCTGAAAATGGGTCCTTTTCTTGGGGACTCATGTCCTCAGGCACTTGCTTGGCACCGGGTAAAAGAAGTGGCGACATACGTTCATGTAAGTGGGCCATAGTAGCAGATGGGACACTGATTGCTCTGTTGTTTACAGCTGTTTGTGTCCCTTCATGTGACTCAAACTAGCAGGAAAACAAGGCAATGTTGCACCCAAGTGCAAAAATTATTTGTGGCCCCCATTACGAATTGGGCCAAGTGCTCCAAACTGTAATGGACCTTTGGCAAAACGATCTCTTTCAATTGAAGATTGTTAGTGTGGCACTGCAGTAGATAGAATGACTGAAAATGGTTTAGAGTGAGTCTCAAAATCCATTTATGAACAAACCTTCTGCATCActccaaatgtttattaataattttcaaCAGCAAATAATCATGTTGACTGTGAATTTTTCCAAGGATATCATGATACCACATAATCTACATCTAAAAATATGCATGCTCAGAAAACACCAGAACAGTGTTGGATTTTGTTGACTTACATACTtaaattttcacaattttttgaagaatgttgaggtccagagaaataagcaattttaattGAACACTGAATTTGAGTTGAACcaaatttttaacattaaaaaaatgtatttgatttcaCGTTGTGTCATTCAAATTTACAGGCTGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000095555

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003444 False 489 lncRNA 0.49 4 36424768 36472812
TCONS_00003443 False 450 lncRNA 0.50 4 36424768 36472812
TCONS_00002226 False 441 mRNA 0.47 3 36447498 36472785
TCONS_00003445 False 846 lncRNA 0.42 3 36450821 36472812
TCONS_00003446 True 1019 lncRNA 0.41 3 36450821 36472822

Neighbor

gene id symbol gene type direction distance location
XLOC_001356 NA coding downstream 68302 36355781 ~ 36356466 (-)
XLOC_001355 NA coding downstream 73280 36348693 ~ 36351488 (-)
XLOC_001354 BX324156.2 coding downstream 206020 36188184 ~ 36218748 (-)
XLOC_001353 znf827 coding downstream 272637 36017867 ~ 36152131 (-)
XLOC_001352 NA coding downstream 450985 35972620 ~ 35973783 (-)
XLOC_001358 prmt9 coding upstream 273256 36746078 ~ 36772147 (-)
XLOC_001359 nr3c2 coding upstream 462332 36935154 ~ 37087966 (-)
XLOC_001360 FP102961.1 coding upstream 891050 37363872 ~ 37363990 (-)
XLOC_001361 tnip2 coding upstream 900097 37372919 ~ 37377509 (-)
XLOC_001362 scpp1 coding upstream 906241 37379063 ~ 37383741 (-)
XLOC_001351 NA non-coding downstream 468930 35953978 ~ 35955838 (-)
XLOC_001350 NA non-coding downstream 471574 35952195 ~ 35953194 (-)
XLOC_001365 NA non-coding upstream 1703040 38175862 ~ 38190204 (-)
XLOC_001373 dre-mir-2197 non-coding upstream 2900980 39373802 ~ 39373911 (-)
XLOC_001374 BX324137.1 non-coding upstream 3202884 39675706 ~ 39677920 (-)
XLOC_001375 NA non-coding upstream 3304827 39777649 ~ 39780017 (-)

Expression


Co-expression Network