LOC110530601 (LOC106577224)


Basic Information

Item Value
gene id LOC110530601
gene name LOC106577224
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 82275069 ~ 82288547 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989948.1
ATGAGCCACAGAATGGACTATCATTCGGGTTCTCCGCATAGGGGAGCTCAAGCTGAGTATTGCTGCTATCAACCCAAACTGACCGGATCCCCCTCTGCATCCAGGACTGTTGGCTTTGAGTCGACTATCGCATACACGAACAGAGGATATGCGACGACGCTGAAGAGCGAATTCGGATCCGTTCCGAGATCATCGGAGAGCCTTTTCGATTTATCAAACCCATTTACCGAGGTTTTGACAAAAAGGAATGAGAAAGAACTGCTCCATGGGCTGAACGACCGTTTCGCCGGATTCATAGAGAAGGTGCGTCATTTGGAGCATGAAAATGAATTGTTTGAGAGGGAAATCGAGGAAATCAAACTAAAGGCACAGTCCCCTGCGTCTCTGGCCCAGGAGCACGAGCCAGAGCTTATGGACCTGAGGAACCTAGTTCATGACATCACCCTTCAGAAGCGTCAGATCGAGATAGAGCATCAGAACCTGGAGGAAGATTTCCTCACCTTGAGAGACAAGTATGAGCAGGAGGCACGTGACCGCTCGAACGCAGAGAACGGCATCCTTGTGCTGAAAAAGGACGCCAACGATGCATACCTTGCCAAACTTCAGTTGGAAAAGAAAGCGCAGTCTTTGGTGGACGAGATCCACTTCCTGAAGAACAACCATGAGGACGAGATATCAGAAATGGTGGCCCAGATCCAAGAGGCTCAAGTAACGGTCAAGGCGTACAACTTTGGCAAACCTGACATCACAGAGGCTCTCCGGGAGATCCGTGTGCAGTTAGAAGGTCACGCCACTTCCGACATTCAGCAGGCCGAGGAGGGCTTCCGTGTCCAGTTCGCAAAGTTAACCAAAGCGGCAGAAAGTAACAGAGAGGCGTTGAAGGCAACCCAACAGGAGATCCAGCAGAATAGAAGGCACCTGCAGGGGAAGACAATTGAACTGGACTGTGGTAAAGGAATGAGAGAGGCCCTGGAAAAACAACTACAAGAGCTGGAGGAGCGTCACTCTGCAGAATTGATTCATTACCAGGACACTATCAGGCAGCTGGAGAATGAGCTGACCAATGCTAAACTAGACATGTCTGGCTACCTGAGAGAGAACCAGGACCTGCTGAATGTCAAAATGGCTTTGGATGTGGAGATTCTCTCTTACAGGAAACTCCTGGAGGGTGAGGAGTCCCATCTGTACACCATCTCTGACACCCACATCTCCATGCCCTGCATCTACCGCCAGTCCCCCGTCTACACCCTGCCTTGCCTGGCCCGGCAGGGAGGGCCCACACGCAGGTCTGAACCCCAGTACAAGTTTGTTGAGGAGATCATCTCTGAGACCACCAGAGACATGGAGATGTCCGAGATTGAGGAGAAAGGCTCCGAGGAGACGgtcgggggagagggagacaagttgAGACAGAAGCAGGGAGAAGAGAGTGACAAAGCTGAGAGGAGAAGTGGGGAACAGGTGGATGAGCATAAAGAGAAAGCTAGAGGTAAAGTGGATGTTGAAGTGGACGCCCCGGAGGAAGAGGGTGAACAGGAGGAAGAGTCTAAGAGACAGCATATGGTCACATCAGCAGAGGTCGAGGTAAATGGAGATGGAGTTAGCCCTAGTGAGGGAGaaaatggagaggagggagatgatgaaagagaggaggaaaaggggggtgAGCCAGATGCAATCAAAAAGACAGAGGACATTGACAGAGGTGAAAATACACAAAGTGAAGTCAAATCAGCTGAGGCCAccagtgagggagagaaggaaaaacTGGACACAACAGAGAAGCTAGACAGCGAGATAAACGAGACATTAGAAAAAGATGACACCCCAAAACAAGGCAAATCCCAACTAGAGGTTCCCATGAATGGTGACATCTCAACAGAACCCAAAACGTCAGAGTCAGAGGATAGCAAAACAGGAAGTTCAATAAAGGGTGAACCACAGGTCCCCACAGAGGACATCTCCAAAGAACCCAAAAAGGTGTCAgaggagagaaaaatagaaagcCCTTTACAAGAGAAAAAAGAGGTAGATCTGAAAGAGGAGAGTGCCCCAACAGAGCAACAACAAGATAGCCCAAAAGAAAGTCCCATCAAAGAGGGGAAAAAGGTAGATCTGACAGACCAGAGTGCCCCAACACTGGAGCAGAAACCTGATCAGAAGGAGCACAGAGAGTCAGACCAACCTCAAGAGGCAGAGAGTGCTGTGACAACACAAGAAGAGGATCTCCCTGAGCCCACAGAGAAGGACATGGAATCCCCTGATAACACTGCAGAGCTCAACACCAGTTCAACCAAGGAGACAGTGGAGCAGGTGAAGTCACCTGATGATTCTGGTGTAAAAACGACACAAGATGAGAGAACAGTAGGAGAATTAACGACCACCCCTAAACCATACTCAACCCTCACCCCAGAATCAACAACCACCCCTAAACCAGACTCAACCCTCACCCCAGAAACAACGACCACCCCTACAGAAGAGAGTGAAATGATGGGCAGTGGTGACAAAGCTAAGACAATCACACCACCAGAGAAACAGATGCCTGCAGTTGCAGAGAGCAAGGACTCACACAGGGGGGCACCAGAAAGCAACACAATTCAAGAGAAACCAGAGGAAAGTCCAAGGGCCACTGCCGAAGCTACCGGGGATGCCTTAGACAGTCCGTCAGGCTCCCGCGCCTCAGCCGATTCGACTGtttcccatgcctcagccggctcgactTGGTCCCGCGCTTCAGCTGGCACTTCAGGTTCCCGTGCCTCATCAGAGGTGACCGGCCTGCTCCTGGTACTCGGGACCGTTCCTCTGGTCGGCGTCCTGCTTCTTGAGCCCCGCTtcagggaggggACAGTATTAGTTATCTTCCTCATGTCCAGATGCTAa

Function

NR:

description
mucin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989948.1 True 2883 mRNA 0.51 6 82275069 82288547

Neighbor

gene id symbol gene type direction distance location
LOC110532773 LOC106600083 coding downstream 9051 82258046 ~ 82266018 (-)
LOC118966722 LOC106600083 coding downstream 29437 82232580 ~ 82245632 (-)
LOC118966721 LOC106577224 coding downstream 56186 82210502 ~ 82218883 (-)
LOC110530609 LOC106577197 coding downstream 76647 82190918 ~ 82198422 (-)
LOC110532767 LOC106577224 coding downstream 87863 82182893 ~ 82187206 (-)
LOC110532782 LOC106577197 coding upstream 3245 82291777 ~ 82301867 (-)
LOC110530617 zn503 coding upstream 150595 82439142 ~ 82442325 (-)
LOC100301648 LOC106577193 coding upstream 661062 82949609 ~ 83267163 (-)
LOC110530648 LOC106577192 coding upstream 983982 83272529 ~ 83374623 (-)
LOC110530724 anx11 coding upstream 1098450 83386983 ~ 83409300 (-)
G92632 NA non-coding downstream 3735 82270655 ~ 82271334 (-)
G92631 NA non-coding downstream 51310 82200416 ~ 82223759 (-)
G92630 NA non-coding downstream 71797 82202855 ~ 82203272 (-)
G92637 NA non-coding downstream 85504 82188300 ~ 82189565 (-)
G92636 NA non-coding downstream 94917 82179295 ~ 82180152 (-)
G92661 NA non-coding upstream 13355 82301902 ~ 82302118 (-)
G92669 NA non-coding upstream 25776 82314323 ~ 82314551 (-)
G92642 NA non-coding upstream 34358 82322905 ~ 82323402 (-)
G92677 NA non-coding upstream 42066 82330613 ~ 82330927 (-)
G92566 NA other downstream 113326 82160407 ~ 82161743 (-)
LOC110530475 eif4ebp2 other downstream 657745 81607478 ~ 81629726 (-)
LOC110532756 LOC106577174 other downstream 1093606 81175845 ~ 81449471 (-)
G91947 NA other downstream 1238931 81035575 ~ 81036138 (-)
G91943 LOC106577167 other downstream 1243711 81030832 ~ 81031358 (-)
G94201 NA other upstream 1195509 83484056 ~ 83485937 (-)
G94613 NA other upstream 1512785 83801332 ~ 83802471 (-)
LOC110531033 LOC106577242 other upstream 1870276 84157529 ~ 84256949 (-)

Expression


Co-expression Network