G961


Basic Information

Item Value
gene id G961
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 2078898 ~ 2079603 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1201
cagatggagacggacgagagacagatggagacggacgagagagggagacagatggagacgggggagaggcagatggagacgggagagagaggggagacagatggagacgggagagagacgggagacagatggagacgggagagagacagatggagacgaggagagacagatggagacggaagagagagatgtacagactcattgagcatagccttgctattgagaaaggccgccgtaggcagatctggttctcaagagaagacaggctatgtgctcactgcccacaaaatgaggtggaaactgagctgcacttcctaacctcctgcccaatgtatgaccatattagagatacatatttccctcagattacacagacccacaaa
>TU1202
cagatggagacggacgagagacagatggagacggacgagagagggagacagatggagacgggggagaggcagatggagacgggagagagaggggagacagatggagacgggagagagacgggagacagatggagacgggagagagacagatggagacgaggagagacagatggagacggaagagagagatgtacagactcattgagcatagccttgctattgagaaaggccgccgtaggcagatctggttctcaagagaagacaggctatgtgctcactgcccacaaaatgaggtggaaactgagctgcacttcctaacctcctgcccaatgtatgaccatattagagatacatatttccctcagattacacagacccacaaa
>TU1203
cagatggagacggacgagagacagatggagacggacgagagagggagacagatggagacgggggagaggcagatggagacgggagagagaggggagacagatggagacgggagagagacgggagacagatggagacgggagagagacagatggagacgaggagagacagatggagacggaagagagagatgtacagactcattgagcatagccttgctattgagaaaggccgccgtaggcagatctggttctcaagagaagacaggctatgtgctcactgcccacaaaatgaggtggaaactgagctgcacttcctaacctcctgcccaatgtatgaccatattagagatacatatttccctcagattacacagacccacaaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1201 False 383 TUCP 0.41 4 2078898 2079603
TU1202 False 383 TUCP 0.43 4 2078898 2079603
TU1203 True 383 TUCP 0.42 4 2078898 2079603

Neighbor

gene id symbol gene type direction distance location
tmem131 LOC102783117 coding upstream 111322 1859377 ~ 1967576 (+)
LOC110520782 LOC106574119 coding upstream 308464 1732789 ~ 1770434 (+)
atp10a atp10a coding upstream 482279 1460067 ~ 1596619 (+)
gabrb3 LOC107673538 coding upstream 680518 1334097 ~ 1398380 (+)
LOC118964682 NA coding upstream 750632 1327322 ~ 1328266 (+)
dpt LOC106574207 coding downstream 97069 2176672 ~ 2192895 (+)
zbtb11 LOC106560622 coding downstream 132532 2212135 ~ 2258325 (+)
LOC110531937 LOC106574099 coding downstream 458731 2538334 ~ 2580308 (+)
LOC118966170 NA coding downstream 1319823 3399426 ~ 3400148 (+)
bcl6aa LOC106574104 coding downstream 1523060 3602663 ~ 3624582 (+)
G864 NA non-coding upstream 1610 2076716 ~ 2077288 (+)
G952 NA non-coding upstream 15213 2063179 ~ 2063685 (+)
G951 NA non-coding upstream 28267 2050359 ~ 2050631 (+)
G938 NA non-coding upstream 33997 2010942 ~ 2044901 (+)
G948 NA non-coding upstream 35188 2043353 ~ 2043710 (+)
nme7 at233 non-coding downstream 18884 1984326 ~ 2101039 (+)
G853 NA non-coding downstream 39308 2118911 ~ 2130795 (+)
G971 NA non-coding downstream 40288 2119891 ~ 2122724 (+)
G973 NA non-coding downstream 43942 2123545 ~ 2125928 (+)
G980 NA non-coding downstream 56557 2136160 ~ 2136431 (+)
G583 NA other upstream 1068691 1003783 ~ 1010207 (+)
G166 NA other upstream 1758924 318047 ~ 319974 (+)
G51 NA other upstream 1948635 120466 ~ 130263 (+)
G50 NA other upstream 1958591 112959 ~ 120307 (+)
G26 NA other upstream 1985180 56555 ~ 93718 (+)
G998 LOC106576565 other downstream 179280 2258883 ~ 2305334 (+)
G2016 NA other downstream 564732 2644335 ~ 2645169 (+)
G2343 NA other downstream 1135094 3214697 ~ 3216234 (+)
G2464 NA other downstream 1423666 3503269 ~ 3503581 (+)
G3176 NA other downstream 2095720 4175323 ~ 4178073 (+)

Expression


Co-expression Network