LOC110524478 (LOC106613944)


Basic Information

Item Value
gene id LOC110524478
gene name LOC106613944
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 71226012 ~ 71242283 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604176.2
CTGACTTCATACTGTATCAATGGACtaggggaggagaatgaggaggcaaggaatgtgtttctactgtctaTCTCATAATCTTGAGTTTAAAAGTTCTCTCAAAGAGGGTACTAAGTAGTTCAACACAGTGTGAAGAAGAGAGGACACGCACAGCATACCACGGCAATATTATTTTGACCTGCGCACAGGACTGTTCAGTCAGCGGCTGCCAGTGGGGATTCAACAAACACTAACCCGTCGGAGAACTCAACACATAGATTACAAAGATGCCTGTGGAAATGCTGTCAGTCAGACACTCTCTGTCTAATGTGGGTAGGTTCCCATCAGTCACATTGGGATGGGGGAAGGATGAGCCAGAGAAGGAGGAACCAGAGGAGGAGAACACAGAGGAGGGGGCGTGTCGACAATGGTTGCGTAAGATCTGTCCTTGCTGCTGTCAAAGACTGAGCGATGATGATGACATCACAGATACAGACAACAATGCAGGGATGAATGGCGACAAGCCAGTCACTGGTGGAAGTGAGCTCGAAGAGCTGTTGTTGACAGTGCGGTCCATAGACCTGATGAAAACCAAGACGGGTCTGAACCGCCTGGAGCATCACACAGACCGTTACTATGGTGATGACCTCATCATCCGCAGGGGGAATACCTTCATGATGTGGCTTGACCTCTCACGACCTTACTACCCCAACACAGACAGACTCCACCTGGAGCTTAAGACAGGATCCCTACCTACAGTGGCAAAGGGCACCCATGTCATCATCCCATTGGTTGAGGAGCTGGAGGATGACCGTTGGGAGGCCAAGATCGTGAAACGGGACGGCAACAGGATCAAGCTGTCTGTTAACTCCCAGCCCACTGCCATGATTGGCCGATACCAGCTCACTGTGGCAACGCATAGCCCGAAGGGCAAGGCCACATCTACACATGACCCAGGGAATGACATCCGCATGCTGTTTAACCCTTGGTGtgaagatgacactgtGTACATGGACGATGAGGATGAGAAGAATGAGTATGTCCTGAATGACGTCGGCAGGCTTTACTATGGCACAGAGAACCAGATTGGTGCAAGAACATGGAACTATGGACAGTTTGATGAGGGGATCCTGGATGCCTGTCTGTATGTTTTGGAGAAGAGTGTAACCCCCCCCTCAGGCTGGGGAGACCCTGTCAATGTAGTCCGAGTCATTTCAGCCATGATCAACTCCCCAGATGATTGTGGGGTCGTGGAGGGTAATTGGTCAGGGAAGTATGTGGGAGGGACTTCCCCTACAGCCTGGAGTGGCAGTGTGGACATCCTGAAGAAGTACCAGAAGGACGGAGGCATACCAGTCAGATATGGACAGTGTTGGGTCTTCTCTGGGGTCACTACCACAGTATTGAGGTGTTTGGGCATTCCCTCCCGTAGTGTGTCCAACTTCAACTCTGCCCATGACACAGATGTCTCCCTGACAACAGACGTGTACTTCAATGAGAATTTGGAGTCTATAGATCACCTCAACACTGACTCCATCTGGAACTTCCACGTGTGGAACGACTGTTGGATGGCTCGTCCAGACTTGCCACCAGGTCATGGTGGCTGGCAGGCGATAGACTCCACCCCCCAGGAGACCAGCCAGGGCACCTTCCGCTGCGGCCCTGCCTCCATCACCGCCATCCGCAACGGACAAGTGTTCCTCAAACATGACTCACCCTTCATCTTTGCCGAGGTGAACAGTGATAAGATATACTGGCAGAGGAACCTGGATGGCACCTTCACCCAGATCCACAGTGAGAAGAATGCAGTGGGCCACTGTATCAGCACCAAGGCTGTGGGCTCAGATGAACGCAACGATATCACACACCTTTACAAGCACCCAGAAGGCACAGAAGAGGAACGCATTGCTGTGGAGACTGCCAGTCGCTATGGTTCCAAACCAGATACCTACTCCTCTCCAATCGCTGAGGATATATCAATAGAGGTGACCATGGATGGGGAGGGGCCACGCATGGGGGGAGATGCAGAACTGAACATTGTCATGCGAAATGCTAGTTCTCTACCACGCACTATCAACCTCCACAGCCAGGTGGCAGTCATGTACTACACTGGCGTGCTCAAGGCCACCGTCAAGAAGGACGAAACGCCTGTGGAGCTGCTAGCCAATGAAGTGAAGACCTTGGAGTGGATCCTTCAGTACCAGCACTATCAGGACCAGCTAGTGGACCAGGCTGCTCTGATGCTGACCCTCTCAGTCCGGGTCACTGAGACACAGCAGGTCCTTGCCACTCAGTTCAGCTTCCGCCTCCGCACCCCCGACCTCATCATTAAGCCGGTAGGGGAGGCTGTGGTGGGGAAAAAGATGGCGGCTGAGATTTTCTTCACTAACCCTCTGCCACGCACACTGAAGGGAGTGGTGTTCCGTGTGGAGGGGCTGGGCCTGCAGAGTGTTCGACAGATCGCTGTTGGtGACGTGGCCAGTCGCTCCTCTGTGACTCTGACGGAACACTTTGTTCCTACTCTGCCTGGATCCAGGAAACTGGTGGCTTCTCTGGACTGTAAGCAGCTCACACAAGTTCACGGCGTCGCCAACATTGATGTCAAGGAGAAATGAGCCTTTGGACACCATAGACCCCTTTTGGTCTGCTTTACTATTGAGGCATAATCACTGTGGATGACAGAAGACGTCACCACCTTCTCCTCTTCCATACCAGAGCACTGATGTTGCTGTTGAGTTCATTATGATGTTTGAAAGTACAGTCTAAGTTAGAGACACAGGAAAACCAAACACCATGCAAGACAAACCTTTTCAATCATCATATGTTTCCACTTGAGGATTCCTGTCCCTTATATTGTAACGTTTTTTCATCCCTTCCACTCAATATCAGATTGGACCTGTATAATGTGCCTTGGAAAGTGCCTAAGCATATGATTGCAGTCTTTACAAGATTGGTATTAGAACTTGTACAATTGCATGACATTTCAAAATGTATCTTACCTACTGAACAGAGCACAACTACAGTACATGACACATGGGAACAATAATGTTTGTTTAGTATGCTGTACAGTAAAGCACAAATACTGTGTACAGTGGTTTGTTATGTTGCCAGAGCATTGTATATCTATGACACAATCAGCTTTTTCTCAGATATGATTTTCTAACACTTATTAGAAGGGGTATGTGTTACCTTACACTCTACATTTGAATAATGCTATGGTGTTATTAACTCGTAAAACGTTGTTGATTTTAAGAGATCAGTTCTTTtaaacatacaggtaactgccaaaataaaggaaacacttgggtAAATGAGGAATACattgtatattgaaagcaggtgaatCCACACAGGTATGGTTCCTGAGCAATTGACATCCCGTTATGCTTAGGGCCATGTATAAAAATTCTGGGCAGGCcaagttgcccattattttgctaccatggttatgccctcataggatgacaatgcccccatccacagggcacgagtgggcACTGAATGGTTTGTTAAGCATGAAAATTATGTAAACCATATGCTATCACCGTCTCAGtgaccagatctcaacccaacacttatgggagattctggagcagtgccTGAGAGCGttctccaccaccatcaacaaaacaccaaattatggaattccTTGTTAAAGATAGGGATGCGACACCAtcgatagagttccagacacttgtagaatctatgccaacgcacattgaagctgttctgacagctcgTGGTGGTCCAACATCCTATTaaaacactttatgttggtgtttcctttattttggcagttacctgtatatccaCCTGTATTTATGCACGAGAGTGTAACTGTCTAAAAGTAATTCTATGTGAAATTGATGAACGTGAGTGTATTATGAAGTCAAGTTAAAGATGCTCCAGCCCAGGTTTTGTAGTAATATCAGCTAGCTTTTCTAAATGGCAGCTTTGGCACTTAACAAAATTAACAACCCTGAAGTGTCACAAACTGATGTAAAGGCAGCTACATCACAAACAGTAGTCTGCAACTGCTTTAACTGTTTGAAAACAGAAAATATATTGTATTTATgtgatatttacatttttatactgtattataccatgcaagTAAATGATTTCACTTCAATATTTTGCCCTtattctgtgtgtgagagagcgagcgagaggataGGATGAACTTTGTCCCTGAGGGGGAAATTATCTTAGGCACAcagtgcgagagagagaaagtggtatAGTGACAGAAACAGGTCTACAACAAGTACAATATTTGGTTGGAcaacctctcccctccacctTTCTGCAAAACATAAATTATTAGTGACCCTCCTTTGGATGGTtaatttctacacattttgctatggggcacagagaaaatgttgcagtttttatacatgttttctgcaattctacatattttgccattGGGTGGTGTGAACATTTTATAAcatatttcatgcaattctactaatttt
>TU492901
tCTCAGTTTGATGAGGGGATCCTGGATGCCTGTCTGTATGTTTTGGAGAAGAGTGTAACCCCCCCCTCAGGCTGGGGAGACCCTGTCAATGTAGTCCGAGTCATTTCAGCCATGATCAACTCCCCAGATGATTGTGGGGTCGTGGAGGGTAATTGGTCAGGGAAGTATGTGGGAGGGACTTCCCCTACAGCCTGGAGTGGCAGTGTGGACATCCTGAAGAAGTACCAGAAGGACGGAGGCATACCAGTCAGATATGGACAGTGTTGGGTCTTCTCTGGGGTCACTACCACAGTATTGAGGTGTTTGGGCATTCCCTCCCGTAGTGTGTCCAACTTCAACTCTGCCCATGACACAGATGTCTCCCTGACAACAGACGTGTACTTCAATGAGAATTTGGAGTCTATAGATCACCTCAACACTGACTCCATCTGGAACTTCCACGTGTGGAACGACTGTTGGATGGCTCGTCCAGACTTGCCACCAGGTCATGGTGGCTGGCAGGCGATAGACTCCACCCCCCAGGAGACCAGCCAGGGCACCTTCCGCTGCGGCCCTGCCTCCATCACCGCCATCCGCAACGGACAAGTGTTCCTCAAACATGACTCACCCTTCATCTTTGCCGAGGTGAACAGTGATAAGATATACTGGCAGAGGAACCTGGATGGCACCTTCACCCAGATCCACAGTGAGAAGAATGCAGTGGGCCACTGTATCAGCACCAAGGCTGTGGGCTCAGATGAACGCAACGATATCACACACCTTTACAAGCACCCAGAAGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604176.2 False 4460 mRNA 0.47 14 71226012 71242283
TU492901 True 779 TUCP 0.54 5 71229182 71230589

Neighbor

gene id symbol gene type direction distance location
LOC110524476 LOC106613943 coding downstream 6061 71213713 ~ 71219951 (-)
LOC110524475 LOC106613941 coding downstream 16463 71199219 ~ 71209549 (-)
LOC110524474 LOC106613939 coding downstream 26814 71194774 ~ 71199198 (-)
LOC110524473 LOC106613938 coding downstream 48387 71163319 ~ 71177625 (-)
LOC110524470 LOC106613933 coding downstream 119811 71069365 ~ 71106201 (-)
LOC110524479 LOC106614022 coding upstream 12969 71255252 ~ 71258824 (-)
il12rb2 i12r2 coding upstream 27589 71269872 ~ 71285310 (-)
il23r LOC106613945 coding upstream 43442 71285725 ~ 71308015 (-)
hook1 LOC106613947 coding upstream 85977 71328260 ~ 71341344 (-)
pfas pfas coding upstream 112785 71355068 ~ 71366687 (-)
G435313 NA non-coding downstream 66871 71158940 ~ 71159141 (-)
G435307 NA non-coding downstream 73821 71151364 ~ 71152191 (-)
G435306 NA non-coding downstream 76130 71149376 ~ 71149882 (-)
G435305 LOC106584301 non-coding downstream 76926 71148766 ~ 71149086 (-)
G435291 NA non-coding downstream 94327 71131478 ~ 71131685 (-)
G435359 NA non-coding upstream 259 71242542 ~ 71242817 (-)
G435361 NA non-coding upstream 2874 71245157 ~ 71245387 (-)
G435383 NA non-coding upstream 52460 71294743 ~ 71295021 (-)
G435386 NA non-coding upstream 56182 71298465 ~ 71298675 (-)
G435435 NA non-coding upstream 190328 71432611 ~ 71434941 (-)
G435176 NA other downstream 157125 71068025 ~ 71068887 (-)
G435234 NA other downstream 234214 70990892 ~ 70991798 (-)
G433683 LOC106613912 other downstream 1701222 69486406 ~ 69524790 (-)
G432513 NA other downstream 2219906 69004619 ~ 69006106 (-)
G432338 NA other downstream 2470955 68748558 ~ 68755057 (-)
G436172 LOC100136696 other upstream 798679 72040962 ~ 72121697 (-)
G436830 LOC106605384 other upstream 1346001 72588284 ~ 72588576 (-)
G436842 NA other upstream 1374013 72616296 ~ 72616944 (-)
G436847 NA other upstream 1429871 72672154 ~ 72672826 (-)

Expression


Co-expression Network