XLOC_031000 (sptbn4a)


Basic Information

Item Value
gene id XLOC_031000
gene name sptbn4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 22465086 ~ 22501663 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060227
GAGCTCCCAGAGGCCGACAGGATGCTGACAGCTCGCGATGGAGCTAGAGATGAAGCTCAGAAGCTGCACAGGAAATGGATGAAGCACCAGGCCTTCATGGCCGAACTGGCCCGCAACAAAGAATGGCTCGCCAAGATTGAACAGgagGGCGAAGAGCTGATCCAGGAGCAGCCCGAGTTGCGATCGGTGGTGGAAATGAAGTTGAAGGAGATCAGAGAGTGCTGGTCTCACCTGGAGAACACCACTAAAGTCAAGGCCCGGCAGCTCTTTGAAACCCAGAACCACCGGACTACTGACCTGCCCACTAACAACCTCAGCGACCTGGACCAGCATTTGAACATCATACAGGAGCAGCCGCCCACACTGGGCTCCACCCACACCACACAACCCACCCTTCTCCAGCCCCGTCCCACTTTTAGCCAGCAGCTCCAGAGGATACAATCATGGGAAGACCAAATGCAGCTTTTTCATGGCGTTAGTGAAGTCATGGCTGGTGCTGAACACAGGAGACCTGAAGGAGAAGAGCAAGGAGGCGTGCCAGAAACCCGGATTGTGCGTCTGATTGAGCCTCTGAAGGAAAGGAGGCGGATTCTTCTTGCCTCAAAAGAATTGCATCAAGTCACACAGGACCTGGAGGATGAGATTATATGGATTCAGGAGCGGTTGCATTTGGCCTCATCTATAGAATATGGGACCAATTTGCAGAGTGTCCAAAATTTAATGAAAAACCATGAGGCACTGCAGATGGAGATGCAGGTTCGGAAGGGGAGACTCGAGGAGGTTCTGGAAAGGGCAGAGGCTGTTGCTGCCTTGCGGACCCCAGAGGTGGAGCTTGTGCGCGAGGGGGCGGGGCATGTGAGACAGCTGTGGGAGGTGCTTCAGGTGGAGATGGAACGCCGCACAGTGATGCTGGATGCTGTGAACCAAGCCCAGCAGTACTACAGCCAGGCAGCGAAGACAGAGTCCTGGCTCAGTGGACAGAAACTTCAGGTCCTCAATGAGGAGAAAGGAAACGACGAGGCCAGCACTCTTAGGTTACTGAAGGAGCAGTTGGCTTTAGAGCAAACAGTGGAGAATTATGCAGAGACAGTGGGCTCACTGTCCCAGCAGTGCCGTCGCATGCTTGAGTTGGGACATCCAGACAGTGAGCAAATCACCAAGCAGCAGGCTCATATAGACCGGCTATACGTATCTCTGAAAGACCTGGTAGAGCAGAGGAAAACAAAACTGGAGCAGCAGTACTGGTTATATCAGCTGAAGCGAGAGGTGGAGGCACTGGAGAAATGGATCTCTGAGAGGGAAGCTGTTGCCAGCTCCACTGAGCTCGGCCAGGACCTGGAGCATGTCACGGTTCTTCAGAGCAGCTTCACGCAGTTTTCCTCTGAGACACGTGCAGTGGGCCAGAAACAGATGGATTCAGTCAATAAGATGGTGAATGAGATGATCGACTGCAGTCACTCTGATGCTGCCACCATTGCAGAGTGGAAAGACGGACTGAACGAGTCCTGGGCGGATCTACTGGAGCTCATGGAGACCAGAGCGCAGATGTTGGCAGCATCCTACCAGCTGCACAAGTTCTTCACTGACTGTCAGGAGATAGAAGGAAAGATGAGACAGCTGCCAGAGGTGAGGTCCTGCCAGGTGAGCTCGGCCAACCCTGGCACACTACAGAGACTCCTGCACTCTTTCGAACACTCTCTGCAGCTGCTGGTCTCGCAGGTACGCCAACTGCAAGAAAATGCAGTTCAGCTACGTGCAATCTATGCTGGGGAGAAGGCAGATGCCATTTTGAGCCGTGAGCAGGAAGTGATGCAGGCCTGGAAAGAGCTCCTCGTTGCATGTGAGGGCAGCCGTGTGCAGGTCACCACTGTAACCGATAAGATCCAGTTCTTTGCGGTGGTGCGGGAATTGAGCATGTGGATGGATGGAATCATGGGGCAGATTGGCCCAAATGACGATGCAAGGGACCTCTCAGTGCTAGAGGGCATGATGTCCCAACATCAGAATCTGAAGAGTAAGATGGAAAACAAGAGCAAGAACTTTGTGCACTGCGTGGAGATGGGAAAAATGCTGCTCGCTGCGCGCAACCCTGCAGCTGAAGAGGTGAAGGAAAAGCTGGAGTATGTCATGGCAAAGCAGAAAGAGATGAATGAGCGATGGGACCTGCACTGGGAGAAGCTTCAGCAAGCCAAGCAGAGGCTGCAGTCCACTCAGACGGGATTGACGGAGCAGCCCTGGCTCACAATCAAGGAACCAATTACTCCAATCACCCGTGAGGCAGGGGGCGGGACAGACGAGGTGGAGGAGCTGATTCGCCGGCATGAAGCATTCCGGAAAGCTGCGTCCACTTGGAAAGACCATTTCAGCTCTTTACGACAGGCAGAAAAGATGAAGGAGGAACTGAACAAACCACCTTCTACCTCCTCTCTTCTCAGCAGGCAGATGTTCCCTCTCTCCTGTCTTGTGCCCagctcttcttcctcctcttcatcatcatctctttTCCGTAACCCCCTTCAGGACTCACTCCTCGAGTCTAAGCCTGGACCAGACCACATGCACTCCATAGAACACACAGTGACTCACACTCTCCCTCAGCGGCTTGGGTCCAGCCTGAACCCCTACACACCTGTTATGAATGGCTCCTCCTACCATGGGCTACAGCAGCCATCGGGGGTCGTCAATGAAAGTCCTTTATATCAATCGATAAAACAACAGGGTGTTTCAAGTTTGGATAATTCCAGCTATCAGGGGCTTAACCAACAAGTTGGTGTCTTTGGGGGGAACAGCTCCAGCTATACTGGACTAAATCAACAGGGTGCTTTAGCAGAGGACGGCTCCAGTTACCATAGCCTGAACCATTTAGGTGCCGTAGGGGTTGTGGAACCCAAAATTGGATATGCTTGGCAGCATCTGAAAGCTGACTGCTTTCAGCCCAAAATCAACCACATTCACAAAGCGGTTTCACCTTTACTGGAGGCCCACCGAGCTCAGCTTGCTAGCGCAGGAGCAAACATGCCGGCTCCTCCAGTGGGCATGGACCCCTCGCTGGAGATGATCCACAGTCGTTTACAAAGAGACCCCCGGGGGAGCCGCTCTGACCCACAGATGGATCACCTGCGGCGGGAGAGGGAGTACAGGCTAGGCAGACAGACTTCCAGCGAGCAGGAGATCCAGGCTCGACTCAACGAGCTGCCGTTGATTGTTCGGCAGGAGCGCTACCGTCGAAGAATGGAGAGACAGTCGTCCAGTGAGCAGGAGGCCAGCGGAAAGCAGAGAGTGCAAAAACATGACTCCAGTGATGCAGAATCTGGGAAAGAGCCATCTGACAAGAAGCCATCTGGGGAGAAGCGTTCCACTATGGCTGAGATTGTTGAGCAAGTGCAGGAGAGAGAAGCTTGCCATGCGAGAGGAGAGGTTTACAGACCCGCCAGTAGCCTCTCTGCACCAGTCAGTCGTCTAGATCGTCCTCGAGCACGTGACCGTCCCAAACCACGAAGAAGGCCTCGTCCAAAAGAGCCAGAAGAGCCACGGAGGTCACGCTCTGCACCTGCACAGAGTGTCCCTTCTACACCTCAACCTCCGACTCACACCGTCCACCATGAGGGCTTCCTGTACAGGAAACACGAAGAGGAGGGGAAAGAGAGAAGCCCAAACAGTAAATCGTGGGTAAATCTATTCTGCGTGCTCAAACAAGGGGAGATCGGTTTTTACAAGGATGCACGACACACAACCACACCCTACAATGACGAGCCTCTTCTTAACCTTGCCATCTGCGAATTTGACACCACCAATGGATacaaaaagaagaagaatgtCTTCATTCTCAGGACCACTGCTGAAGGGGACTACATCTTCCTGGCTAAAGATGAGGAGGATCTGAAAGGTTGGGTCAACAGCATCAACGCTAGCCTGAAAGAGATCGAGGACATTGCCAAGTACGAGAAAGCCACAAACTCCTCCACCGACCCCGACAAATCAGAGCGCAAGGAGCGTTCTGAAGGGGCGGAGCCATCAGAGGGGGTGGAGAGATCAGAGAGGTCAGAGAAGTCTGAGCGTTCAGACCGATCAGATAAAATAGAGGCATCGGACAAAAGCTCCGAAAGGAGGGACGCATCTGAGAAGGAGAGAGGAGATAGAGGTGAACGAGGAGAGAGGGCGGAAAGAGGGGATCGAGAGAGGGGTGAGCGAGGAGACCGGGGTTCCAGAGGATCTAGCACTTCGGGAAAAAGCAAATGA

Function

symbol description
sptbn4a Predicted to enable phospholipid binding activity.

GO:

id name namespace
GO:0005543 phospholipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060531-133 Predicted to enable phospholipid binding activity.

Ensembl:

ensembl_id ENSDARG00000068624

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060227 True 4239 mRNA 0.53 19 22465086 22501663

Neighbor

gene id symbol gene type direction distance location
XLOC_030999 NA coding downstream 7797 22455566 ~ 22457289 (-)
XLOC_030998 NA coding downstream 9092 22453830 ~ 22455994 (-)
XLOC_030997 BX546499.2 coding downstream 26491 22435786 ~ 22438595 (-)
XLOC_030996 GPR83 coding downstream 95170 22363015 ~ 22369916 (-)
XLOC_030995 NA coding downstream 229928 22230690 ~ 22235158 (-)
XLOC_031001 NA coding upstream 4782 22506445 ~ 22510064 (-)
XLOC_031002 glra4b coding upstream 13684 22515347 ~ 22544151 (-)
XLOC_031003 aifm1 coding upstream 48951 22550614 ~ 22573673 (-)
XLOC_031004 casp22 coding upstream 83606 22585269 ~ 22602979 (-)
XLOC_031005 zgc:113208 coding upstream 103867 22605530 ~ 22621417 (-)
XLOC_030993 CR812469.1 non-coding downstream 368178 22087656 ~ 22096908 (-)
XLOC_031008 NA non-coding upstream 455232 22956895 ~ 22974641 (-)
XLOC_031012 BX640521.1 non-coding upstream 721038 23222701 ~ 23222819 (-)
XLOC_031015 CT025748.1 non-coding upstream 829490 23331153 ~ 23341623 (-)
XLOC_031017 NA non-coding upstream 944581 23446244 ~ 23456234 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_01287752_01312897 NA coding CI01000339 null 1286922 ~ 1312897 (-)