LOC120554155 (ccnyl1,LOC103374641,LOC104957757,LOC101466371,LOC100696912)


Basic Information

Item Value
gene id LOC120554155
gene name ccnyl1,LOC103374641,LOC104957757,LOC101466371,LOC100696912
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 11708327 ~ 11715150 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792839.1
GTAACCGGAAATTACCTATGAACTCCATTGCTTCGGTGGATTTTGACATCCAAGACGTGTCTCCTGCAAATGCGACGGGATGAAAGCTATCGTTGGCTACCGTTTTTAAAAACTTCAAATACTCGCAACCTTTCCGCTTCCTTAGTTATCTCTTAGGTGGTTTCCATTTAGGGAATTTCTACGGCAGTCCTGTAGAACAACCTTGAATTGTGACAGCGACTTCAACCGCAGTGAAAAATGGATTGATCCATGCTGCTGAAAAAAGCCAAGAATGGATTGAGGTGCggaagctagcgttagcctGCTAGCCAGAGGAGCTTGTGACTCTGTATTGTTGTTAGCCTCTATTCCGTAAAATGAGATGATACCAGTTATTCACCGTCCAAAAACTATTCAGCCCACGCATAGCTATTCTTATTAAAGTGCACCAGTGCTATGCTGCGCACACGCCCTGAATATGTCAGCTGCCCTGCACATACTGCAGACGCCCAGTTGGCTGTCATTACATAGATCCCATTCTACTCCGAAGCAGGGTTTTTCACTTTGCAGCCAAACACTAATGTACTAaactgacattttaaatatttacatGCTTGATCTGAAACCAGAGTCGGGTAGATCTAGTTTCAGATTTACTGTGGTGTTAACGTTACATGCATTAACTGCCACTTAGATTTAGATTCAACTTTGCGTGAGTTGCAGACGCCCGGCGGCCAAGTGTTTGTCAGTTAAGACTAGTGGGTGATCCTCCCTGAGTTGTATGGGAACCGGTGCTGGCTGTAGCAGGACTGTTGTAGGTCAGCAATGGGAGGCTCGGTGTCTTGCTGCATCTCTCCCGGAGAGAGTCCCAAGGTCCACAGGAGAGAGGTGGAGCTGGAGGAGTGTCCCATCACCACCACTGAGGACGTGAGCGAGGACACCGGGACCTACCTGCAGCACATCAGCGACAGGGAGCTCCCCGACGAGCTGGCCCAAGAGGCCAACCCATCAGACCACCCCAGAGCCAGCACCCTCTTCCTCAACAAGTCGCAGACAGACGTGCgcgagaaaagaaaaagcaacTACTTGAATCACCAGATGTCCCCAGGGCTGCTGACCAAAAAGTACAGTTCCTGCTCAACAATATTCATCGACGATAGCACCGTCAGCCAGCCCAACCTCAAGAGCACGATCAAATGCGTCGCGTTGGCCATATACTATCACATAAAGAACAGAGATTCCAACCGCTCGCTGGATATATTCGATGAGAAGAAGCACCCCCTGACGCGAGAAAAGGTTCCAGATGACTACTCTGTGGTCGACCCGGAACACAAACTCATCTACCGTTTCATACGGACGCTCTTCAGCTCTGCACAGCTCACTGCAGAGTGCGCCATCGTCACTCTGGTATATCTGGAAAGGCTGTTGACGTATGCTGAGATGGACATCTGTCCATGTAACTGGAAGCGGATTGTTCTCGGTGCCATCCTGCTGGCCTCCAAGGTCTGGGACGACCAGGCTGTGTGGAACGTCGACTACTGCCAGATCCTCAAAGACATCACAGTGGAGGACATGAACGAGATGGAGCGCCACTTCCTGGAGCTGCTCCAGTTCAACATCAACGTCCCAGCCAGCGTCTACGCCAAGTATTACTTTGACCTGCGTTCACTGGCCGACGAAAACAACCTCAGCTTCCCTCTGGAGCCGCTGAACAACAAGCGGGCTCAAAAACTGGAGGCCATCTCCAGGCTGTGCGAGGATAAGTACAAGGACCTGTGTAAATCGGCTATGAAGAGATCTGTCAGTGTAGACAACCTGGTTGGCATCAAGAACACCCATGCTGTGCTGTCCTAAGTCTGCGACGGGAGGGGTGGAGCAACGGACTTAGAGTTAAGCTACAGGATGTGATGCCACATTCAAGAAAGTCAAGACAGTATTCGCCAAGAGACCTTTCCAAAGTAGATTAACGATATCAGTAACAGAAAAGTTCCATTACAAATTGTTAAATGTCGACATTGGGGGAGGAACAAAAGAGCAGAAGTTTCCCATACACTATCTCTAAAGTATAATGAATCCAGTCTCTCTATGTGTTCATCACAAAGAACTTCAGCTATCTGCCTTTTAAAGCATGATCATTCGGTGAAATATTTtgcacatttattttcaaatggatGTGTAACTTTGGAAGGAATCAGCATGAAAATGCCTCCTGAAGTCACACACGCTGAGGACGTCATCTTCTATTTTTCACATCAGCTGATCTCGTGAGGAGTCTATGGCTTTGGCCCCCTTCTCTCCACCAGCCGTATCCCCTCACCTTCATTCACACGATGACAAACTGTCTCGAACTACCCTGTGGTGTAGTTCTGCACATGGACAAAGAGTACTGTAGACTTTGTTTTGCTTACTATGTAGGCCCCTATAGCTGTGAAATGTACGAGACTTTATTTAATTCAAATAAATTTCAGTCGCCGTTCAAAGTTGAGGCTGCTCTCATGGGAAAA
>XM_039792840.1
AACCGGAAATTACCTATGAACTCCATTGCTTCGGTGGATTTTGACATCCAAGACGTGTCTCCTGCAAATGCGACGGGATGAAAGCTATCGTTGGCTACCGTTTTTAAAAACTTCAAATACTCGCAACCTTTCCGCTTCCTTAGTTATCTCTTAGGTGGTTTCCATTTAGGGAATTTCTACGGCAGTCCTGTAGAACAACCTTGAATTGTGACAGCGACTTCAACCGCAGTGAAAAATGGATTGATCCATGCTGCTGAAAAAAGCCAAGAATGGATTGAGGTGCggaagctagcgttagcctGCTAGCCAGAGGAGCTTGTGACTCTGTATTGTTGTTAGCCTCTATTCCGTAAAATGAGATGATACCAGTTATTCACCGTCCAAAAACTATTCAGCCCACGCATAGCTATTCTTATTAAAGTGCACCAGTGCTATGCTGCGCACACGCCCTGAATATGTCAGCTGCCCTGCACATACTGCAGACGCCCAGTTGGCTGTCATTACATAGATCCCATTCTACTCCGAAGCAGGGTTTTTCACTTTGCAGCCAAACACTAATGTACTAaactgacattttaaatatttacatGCTTGATCTGAAACCAGAGTCGGGTAGATCTAGTTTCAGATTTACTGTGGTGTTAACGTTACATGCATTAACTGCCACTTAGATTTAGATTCAACTTTGCGTGAGTTGCAGACGCCCGGCGGCCAAGTGTTTGTCAGTTAAGACTAGTGGGTGATCCTCCCTGAGTTGTATGGGAACCGGTGCTGGCTGTAGCAGGACTGTTGTAGGTCAGCAATGGGAGGCTCGGTGTCTTGCTGCATCTCTCCCGGAGAGAGTCCCAAGGTCCACAGGAGAGAGGTGGAGCTGGAGGAGTGTCCCATCACCACCACTGAGGACGTGAGCGAGGACACCGGGACCTACCTGCAGCACATCAGCGACAGGGAGCTCCCCGACGAGCTGGCCCAAGAGGCCAACCCATCAGACCACCCCAGAGCCAGCACCCTCTTCCTCAACAAGTCGCAGACAGACGTGCgcgagaaaagaaaaagcaacTACTTGAATCACATGTCCCCAGGGCTGCTGACCAAAAAGTACAGTTCCTGCTCAACAATATTCATCGACGATAGCACCGTCAGCCAGCCCAACCTCAAGAGCACGATCAAATGCGTCGCGTTGGCCATATACTATCACATAAAGAACAGAGATTCCAACCGCTCGCTGGATATATTCGATGAGAAGAAGCACCCCCTGACGCGAGAAAAGGTTCCAGATGACTACTCTGTGGTCGACCCGGAACACAAACTCATCTACCGTTTCATACGGACGCTCTTCAGCTCTGCACAGCTCACTGCAGAGTGCGCCATCGTCACTCTGGTATATCTGGAAAGGCTGTTGACGTATGCTGAGATGGACATCTGTCCATGTAACTGGAAGCGGATTGTTCTCGGTGCCATCCTGCTGGCCTCCAAGGTCTGGGACGACCAGGCTGTGTGGAACGTCGACTACTGCCAGATCCTCAAAGACATCACAGTGGAGGACATGAACGAGATGGAGCGCCACTTCCTGGAGCTGCTCCAGTTCAACATCAACGTCCCAGCCAGCGTCTACGCCAAGTATTACTTTGACCTGCGTTCACTGGCCGACGAAAACAACCTCAGCTTCCCTCTGGAGCCGCTGAACAACAAGCGGGCTCAAAAACTGGAGGCCATCTCCAGGCTGTGCGAGGATAAGTACAAGGACCTGTGTAAATCGGCTATGAAGAGATCTGTCAGTGTAGACAACCTGGTTGGCATCAAGAACACCCATGCTGTGCTGTCCTAAGTCTGCGACGGGAGGGGTGGAGCAACGGACTTAGAGTTAAGCTACAGGATGTGATGCCACATTCAAGAAAGTCAAGACAGTATTCGCCAAGAGACCTTTCCAAAGTAGATTAACGATATCAGTAACAGAAAAGTTCCATTACAAATTGTTAAATGTCGACATTGGGGGAGGAACAAAAGAGCAGAAGTTTCCCATACACTATCTCTAAAGTATAATGAATCCAGTCTCTCTATGTGTTCATCACAAAGAACTTCAGCTATCTGCCTTTTAAAGCATGATCATTCGGTGAAATATTTtgcacatttattttcaaatggatGTGTAACTTTGGAAGGAATCAGCATGAAAATGCCTCCTGAAGTCACACACGCTGAGGACGTCATCTTCTATTTTTCACATCAGCTGATCTCGTGAGGAGTCTATGGCTTTGGCCCCCTTCTCTCCACCAGCCGTATCCCCTCACCTTCATTCACACGATGACAAACTGTCTCGAACTACCCTGTGGTGTAGTTCTGCACATGGACAAAGAGTACTGTAGACTTTGTTTTGCTTACTATGTAGGCCCCTATAGCTGTGAAATGTACGAGACTTTATTTAATTCAAATAAATTTCAGTCGCCGTTCAAAGTTGAGGCTGCTCTCATGGGAAAA

Function

symbol description
ccnyl1 Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in positive regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to act upstream of or within regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to be active in cytoplasm and plasma membrane. Orthologous to several human genes including CCNYL1 (cyclin Y like 1).

NR:

description
PREDICTED: cyclin-Y-like protein 1 isoform X2

GO:

id name namespace
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0019901 protein kinase binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792839.1 True 2483 mRNA 0.48 10 11708327 11715150
XM_039792840.1 False 2478 mRNA 0.48 10 11708327 11715148

Neighbor

gene id symbol gene type direction distance location
tns1a NA coding downstream 23894 11567571 ~ 11684433 (-)
LOC120554150 NA coding downstream 205846 11470451 ~ 11502481 (-)
LOC120554162 ctdsp1,LOC104928328,LOC104957766,LOC103148703 coding downstream 321075 11370953 ~ 11387252 (-)
LOC120554143 LOC104935050 coding downstream 385241 11314682 ~ 11323086 (-)
LOC120554144 NA coding downstream 394183 11306761 ~ 11314144 (-)
LOC120554156 LOC104957759,LOC101074451,LOC100697446,LOC103389560 coding upstream 3031 11718181 ~ 11724139 (-)
LOC120554168 LOC104928316,LOC103357968,LOC104957755 coding upstream 124567 11839717 ~ 11849823 (-)
obsl1a obsl1,LOC102777652,LOC100691457 coding upstream 653246 12368396 ~ 12383014 (-)
LOC120554061 LOC101475634,LOC102213813,LOC107377203,LOC108242213,LOC106525271 coding upstream 887094 12602244 ~ 12644357 (-)
filip1l filip1l,LOC100693076,LOC102798342,LOC102213048 coding upstream 1082694 12797844 ~ 12885098 (-)
G234181 NA non-coding downstream 23160 11684622 ~ 11685167 (-)
LOC120554169 NA non-coding downstream 86974 11620869 ~ 11621353 (-)
LOC120554171 NA non-coding downstream 87471 11619834 ~ 11620856 (-)
G234153 NA non-coding downstream 362451 11343961 ~ 11345876 (-)
G234152 NA non-coding downstream 366488 11336610 ~ 11341839 (-)
G234194 NA non-coding upstream 83413 11798563 ~ 11822502 (-)
G234225 NA non-coding upstream 407090 12122240 ~ 12201428 (-)
G234238 myl1,LOC101075868,LOC104929359 non-coding upstream 484926 12200076 ~ 12270069 (-)
G234240 NA non-coding upstream 495784 12210934 ~ 12212609 (-)
G234311 NA non-coding upstream 643613 12358763 ~ 12361269 (-)
igfbp5a igfbp5,LOC103371819,LOC104928322,LOC101465019 other downstream 170006 11524382 ~ 11538321 (-)
LOC120554153 LOC101072154,LOC104957764,LOC103371815,LOC107377212,LOC108242182 other downstream 218850 11458937 ~ 11489477 (-)
spega LOC103358966 other downstream 266401 11388552 ~ 11441926 (-)
LOC120554131 NA other downstream 569082 11136627 ~ 11139245 (-)
LOC120554127 NA other downstream 661368 11037355 ~ 11046959 (-)
G234253 LOC103139183,LOC106940425,LOC106914874 other upstream 563369 12278519 ~ 12293143 (-)
G234405 NA other upstream 1237940 12953090 ~ 12954125 (-)
arhgap1 arhgap1,LOC101474800,LOC102196105 other upstream 2479162 14194312 ~ 14290043 (-)
G234898 NA other upstream 3132684 14847834 ~ 14849737 (-)
LOC120554377 LOC103355861 other upstream 3251166 14966316 ~ 15013814 (-)

Expression


Co-expression Network