G413795


Basic Information

Item Value
gene id G413795
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_022995304.1
NCBI id VFJC01000035.1
chromosome length 382912
location 121450 ~ 124249 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU491590
gtacaggtgtagaagagtaaagactaacagtaggagtgtgtgtgtgtacaggtgtagaagagtaaagactaacagtaggagtgtgtgtgtacaggtgtagaagagtaaagactaacagtaggagtgtgtgtacaggtgtagaagagtaaagactaacagtaggagtgtgtgtgtgtgtacaggtgtagaagagtaaagactaacagtaggagtgtgtgtgtacaggtgtagaagagtaaagactaacagtaggagtgtgtgtgtgtacaggtgtagaagagtaaagactaacagtaggagtgtgtgtacaggtgtagaagagtaaagactaacagtggggatgtgtgtacaggtgtagaagagtaaagactaacagtaggagtgtg
>TU491591
gtgtgtgtacaggtgtagaagagtaaagactaacagtaggagtgtgtgtgtacaggtgtagaagagtaaagactaacagtagggagtgtgtgtgtacaggtgtagaagagtaaagactaacagtaggagtgtgtgtgtgtacaggtgtagaagagtaaagactaacagtaggagtgtgtgtacaggtgtagaagagtaaagactaacagtaggagtgtgtgtgtgtgtacaggtgtagaagagtaaagactaacagtaggagtgtgtgtgtgtacaggtgtagaagagtaaagactaacagtaggagtgtgtgtgtgtacaggtgtaagAGTAGGTAACagtaggaggtgtgtgtgtgtacaggtgtagaagagtaaagactaacagtaggtgtgtgtgtgtacaggtgtagaagactaacagtaggagtgtgtgtgtgtacaggtgtagaagactaacagtaggagtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU491590 False 386 lncRNA 0.42 3 122151 123856
TU491591 True 471 lncRNA 0.43 3 121450 124249

Neighbor

gene id symbol gene type direction distance location
LOC113528924 LOC108259807 coding downstream 7517 91881 ~ 113933 (-)
taf1 LOC105893216 coding downstream 30819 75564 ~ 90631 (-)
LOC113525500 taf1 coding downstream 95486 16362 ~ 25964 (-)
zgc:158432 NA coding downstream 105714 9466 ~ 15736 (-)
LOC113525691 NA coding upstream 22020 146269 ~ 151909 (-)
acsl4b LOC108415597 coding upstream 98890 223139 ~ 237014 (-)
LOC113525702 LOC108259811 coding upstream 140786 265035 ~ 270893 (-)
LOC113542735 tbc1d8b coding upstream 148587 272836 ~ 303836 (-)
rnf128a LOC108259815 coding upstream 182459 306708 ~ 327900 (-)
G413774 NA non-coding downstream 99892 17341 ~ 21558 (-)
G413799 NA non-coding upstream 6177 130426 ~ 134403 (-)
G413791 NA non-coding upstream 18649 142898 ~ 192112 (-)
G413783 NA non-coding upstream 28427 152676 ~ 271622 (-)
G413792 NA non-coding upstream 36674 160923 ~ 162992 (-)
LOC117596786 NA non-coding upstream 87817 212066 ~ 213276 (-)
LOC113525707 gria3a,LOC108259758,LOC103044872,LOC107597231,LOC107672342,LOC107592272,LOC107732609 other upstream 39016 163265 ~ 204580 (-)
LOC113525038 NA other upstream 115271 239520 ~ 239983 (-)
LOC113525703 mtmr2,LOC108414808,LOC107747813,LOC107732604 other upstream 117183 241432 ~ 251412 (-)

Expression


Co-expression Network