AMCG00014788 (poglut1)


Basic Information

Item Value
gene id AMCG00014788
gene name poglut1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 31297750 ~ 31308262 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014788
TGGCGAGAAAAGTTTTCAGACCTTACTAGGCGCTGACCGAGCGTTCACGTAGACAATTATATGGCcaaacaaacatggaaacaGTAAAGCTGTTGTTGGCTATTTTTATGTTGCAGTTTTACGTATTTGGTTTCAGCGAAGCGGAGACAGGTGGAAGGTGGaagaaatacattgataaaatCACAGAAGCCACTCAGAACTACCGGCCTTGTGAGACACAAAACTGTAGCTGCCACATCAGCGTATTACAAGATGACCTCAGTCCATTCCGTGTAGGAATCTCCAAGCAGCTCTTCAAGGAAACGGTCCAGCGTGGTGTCGGGACACACTACCAGGTCATTGACAAGAAGCTGTACAGAGAGCAGGCTTGCATGTTCCCAGCAAGATGTAGTGGAGTGGAACACTTCATTCTGGAGGTGATTGACAGGCTGCCAGACGTGGAGATGGTGATCAATGTGAGAGATTATCCCCAGGTACCCAGGTGGATTAAGCCAGTCCAGCCAGTCTTCTCTTTCAGCAAGaCGCCTGAATACCAAGACATCATGTACCCAGCATGGACATTCTGGGAAGGAGGTCCAGCAGTGTGGCCAATCTACCCCACTGGTCTGGGCCGCTGGGATTTGATGAGAGACGATCTGAAAAGGTCGGCAGCACAATGGCCCTGGAGGAAGAAGGAACCCAAAGGATTCTTCAGAGGGTCAAGAACCAGCCCTGAAAGAGACCCTCTTATTTTGCTATCCCGTGAGGCCCCTGAATTAGTGGATGCAGAATATACAAAAAACCAGGCCTGGAAGTCAGAAAAGGACACACTTGGAAAACCCCCTACTAAAGAAATTCCTTTATTGGATCACTGCAAATACAGGTATCTCTTCAACTTCCGAGGTGTGGCGGCCAGTTTCCGCTTCAAGCACCTCTTCCTTTGTGGCTCTCTAGTTTTCCACGTCGGAGAGGAATGGCTGGAGTTTTTTTACCCACAGCTCAAGCCATGGGTACACTACATCCCAGTGAAGCAGGACCTCTCCGATGTGAGGGAGCTGCTTCagtttgtgaaagaaaatgatgACATTGCACAGGAAGTGGCAAAGAGAGGACAAAAGTTCATACTGGATAACCTGCAAATTGAAGATGTGGCCTGTTATTGGGAGAAGCTGCTAACAGAATTCGCCACACTCCTGAAGTATCATCCAGAGAGGAACACCAGCTATAGCCACATCACCCACAAACCTGGGAAAACTGAGCTTTGAGAACTACTCTGCAGCTGCCATTAGAATGTTCCGGGCTCTACTCGAAGTACGAATCCACCGTTCACTGCCTACTAAGGTGAAAATGAACACTTGATTATGGGAATCATTAAGCCCAGAGGATTGGCCTCAATATGTATAGGCCACACTTGATGTTTTCTCACTTCCTGTCTCAG

Function

symbol description
poglut1 Predicted to enable UDP-glucosyltransferase activity and UDP-xylosyltransferase activity. Predicted to be involved in positive regulation of Notch signaling pathway and protein O-linked glycosylation. Predicted to be active in endomembrane system. Human ortholog(s) of this gene implicated in Dowling-Degos disease and autosomal recessive limb-girdle muscular dystrophy type 2Z. Orthologous to human POGLUT1 (protein O-glucosyltransferase 1).

NR:

description
protein O-glucosyltransferase 1 isoform X2

GO: NA

KEGG:

id description
K13667 POGLUT1, RUMI, KTELC1; EGF-domain serine glucosyl/xylosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014788 True 1417 mRNA 0.48 11 31297750 31308262

Neighbor

gene id symbol gene type direction distance location
AMCG00014787 vangl1,LOC106574540 coding upstream 33495 31241301 ~ 31264255 (+)
AMCG00014783 NA coding upstream 253009 31041891 ~ 31044741 (+)
AMCG00014784 NA coding upstream 270748 31023543 ~ 31027002 (+)
AMCG00014781 NA coding upstream 380184 30907169 ~ 30917566 (+)
AMCG00014771 NA coding upstream 446608 30847172 ~ 30851142 (+)
AMCG00014792 NA coding downstream 4711 31312973 ~ 31330675 (+)
AMCG00014800 NA coding downstream 373269 31681531 ~ 31696173 (+)
AMCG00014801 NA coding downstream 398986 31707248 ~ 31709519 (+)
AMCG00014798 NA coding downstream 419024 31727286 ~ 31741350 (+)
AMCG00014804 NA coding downstream 445014 31753276 ~ 31763835 (+)
G72815 LOC103352915,LOC107742653,LOC105893249,LOC107739823,LOC107667646,LOC107552369,LOC107700101,LOC108434690 non-coding upstream 10316 31278087 ~ 31287434 (+)
G72789 NA non-coding upstream 293962 31003372 ~ 31003788 (+)
G72783 NA non-coding upstream 341466 30955905 ~ 30956284 (+)
G72769 NA non-coding upstream 451329 30846162 ~ 30846421 (+)
G72768 NA non-coding upstream 453080 30841560 ~ 30844670 (+)
G72861 NA non-coding downstream 153884 31462146 ~ 31463811 (+)
G72875 LOC103376870 non-coding downstream 216053 31524315 ~ 31592105 (+)
G72911 NA non-coding downstream 393900 31702162 ~ 31702435 (+)
G72912 NA non-coding downstream 394884 31703146 ~ 31703573 (+)
G72926 NA non-coding downstream 437261 31745523 ~ 31746900 (+)
AMCG00014786 nhlh2,LOC106574539,LOC107739819,LOC105019883 other upstream 149873 31143423 ~ 31147877 (+)
G72787 NA other upstream 301387 30990063 ~ 30996363 (+)
G72786 NA other upstream 317498 30979570 ~ 30980252 (+)
G72785 fam160a2 other upstream 318925 30978216 ~ 30978825 (+)
AMCG00014777 NA other upstream 485463 30764351 ~ 30812287 (+)
AMCG00014793 NA other downstream 204546 31512808 ~ 31523187 (+)
G72925 NA other downstream 408856 31717118 ~ 31754930 (+)
AMCG00014799 NA other downstream 482639 31790901 ~ 31798463 (+)
AMCG00014811 NA other downstream 631291 31939553 ~ 31962971 (+)
G73103 NA other downstream 1234248 32542510 ~ 32561489 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001284 poglut1 coding NC_007112.7 CM002885.2 28874389 ~ 28890028 (-)