AMCG00014790 (casq1,LOC107742653,LOC107739823,LOC106575318,LOC107552369)


Basic Information

Item Value
gene id AMCG00014790
gene name casq1,LOC107742653,LOC107739823,LOC106575318,LOC107552369
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 31279314 ~ 31292735 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014790
TTTGTGgccttttgttagttttttaagCCACCCTTATTCTGTCTTTCTCACTTGGCCTTGAGAACATGCAGGTCACCTGGTTTTTGCTTGCGCCGCTTTGCCTTTACCTCGCCTCCTTTTGCAGCGCAGAAGAAGGACTCGAGTTCCCCAGCTTCGATGGAAAAGACCGGGTTATACACATCAATGCCAAAAACTACCAAAAGGCACTGAAAAAGTATGACATGCTGTGCCTCCTCTATCATGAGCCCAAGTTGTCCAGCAAGGTGCGGCAGAAGCAGTTTCAGATGACTGAGCTGGTGTTGGAGCTGGCTGCCCAGGTACTGGAAGATAAAGACATAGGGTTTGGAATGGTAGATTCCAAGAAAGATGCCAAAGTGGCTAAGAAACTTGGCCTGGAAGAAGAAGGCAGTATTTACGTGTTCAAAGACGAACGGGTGATCGAGTTCGATGGGGAGCTCTCTGCAGACACTCTTGTTGAGTTCCTTTTGGATCTGTTGGAAGACCCTGTGGAGCTCATTAGCAACTCCATGGAACTCAGGGCCTTCGACAGTATTGATGAGGCCATCAAGCTCATTGGGTTTTTCAAAGGAGAAGACTCTGAGCACTTCAAGGCGTTTCAAGAGGCAGCAGAAAATTTTCAGCCATTTATTAAGTTCTTTGCCACTTTTGATAAAGTCGTGGCAAAACAACTTACTTTGAAAATGAACGAGGTGGACTTCTATGAACCTTTCATGGAGGAACCCGTGACCATTCCTGGAAAGCCATACACAGAAGAGGAGATTGTGGAGTTTGTAAATGAACACAAAAGACCTACCCTGAGAAAGCTACGTGCAGAAGACATGTTTGAGACATGGGAAGACGACATGGATGGAATTCATATTGTGGCTTTTGCAGAGGCAGAGGATCCTGATGGCTTTGAGTTCCTTGAGATCCTGAAAGAAGTGGCCAGGGAGAACACCAACAACCCAGAACTGAGCATTGTGTGGATTGACCCAGATGACTTTCCACTGCTGATTACATACTGGGAGAAAACCTTCAAAATCGACCTCTTCAAGCCTCAGATTGGAGTGGTGAATGTTACTGATGCTGACAGCGTGTGGATGGACCTGGCAGATGATGAGGATCTGCCCAGCGCACAGGAGCTGGAGGACTGGATTGAGGACGTGCTGTCAGGGAAAGTGAACACGGAGGATGACGACGAGGAGGAGGACGATGAGGACGAAGAGGATGAGGACGAAGAGGATGAGGATGAAgacgaagaggaggaggaggaggatgaggatgaagacgaagaggaggaggatgacgaTGATGAT

Function

symbol description
casq1 Enables calcium ion binding activity and identical protein binding activity. Involved in protein polymerization and regulation of calcium ion transport. Located in endoplasmic reticulum. Implicated in type 2 diabetes mellitus.

NR:

description
Calsequestrin-1 precursor

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23445 CASQ2; calsequestrin 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014790 True 1316 mRNA 0.48 11 31279314 31292735

Neighbor

gene id symbol gene type direction distance location
AMCG00014791 LOC106574540 coding downstream 184 31261716 ~ 31279130 (-)
AMCG00014785 NA coding downstream 299437 30952471 ~ 30979877 (-)
AMCG00014782 NA coding downstream 354107 30922355 ~ 30925207 (-)
AMCG00014780 NA coding downstream 516253 30759157 ~ 30763061 (-)
AMCG00014766 NA coding downstream 583989 30689042 ~ 30695325 (-)
AMCG00014789 NA coding upstream 44378 31337113 ~ 31345430 (-)
AMCG00014796 NA coding upstream 176824 31469559 ~ 31471622 (-)
AMCG00014794 NA coding upstream 236262 31528997 ~ 31578588 (-)
AMCG00014795 LOC107746280 coding upstream 301656 31594391 ~ 31620377 (-)
AMCG00014797 NA coding upstream 407892 31700627 ~ 31707522 (-)
G72791 NA non-coding downstream 327939 30950110 ~ 30951375 (-)
G72790 NA non-coding downstream 331971 30946090 ~ 30947343 (-)
G72693 NA non-coding downstream 883976 30395139 ~ 30395338 (-)
G72685 NA non-coding downstream 1017710 30261337 ~ 30261604 (-)
G72680 NA non-coding downstream 1067918 30211142 ~ 30211396 (-)
G72862 NA non-coding upstream 169444 31462179 ~ 31463783 (-)
G72868 NA non-coding upstream 173757 31466492 ~ 31467056 (-)
G72867 NA non-coding upstream 188113 31480848 ~ 31485466 (-)
G72874 NA non-coding upstream 222695 31515430 ~ 31519932 (-)
G72919 NA non-coding upstream 404920 31697655 ~ 31698012 (-)
AMCG00014775 NA other downstream 432514 30841523 ~ 30846800 (-)
G72477 LOC106598269,LOC101158751,LOC106586690,LOC103361283 other downstream 1881009 29389290 ~ 29398305 (-)
G72236 rpl8,LOC107595836,LOC107748161 other downstream 2946832 28329739 ~ 28332482 (-)
AMCG00014692 LOC107756725 other downstream 3909787 27335695 ~ 27369527 (-)
AMCG00014693 NA other downstream 3974717 27285420 ~ 27304597 (-)
G73047 NA other upstream 970432 32263167 ~ 32263427 (-)
AMCG00014816 NA other upstream 1162571 32455306 ~ 32555945 (-)
G73127 NA other upstream 1304727 32597462 ~ 32619149 (-)
AMCG00014824 NA other upstream 1502270 32795005 ~ 32806295 (-)
AMCG00014825 NA other upstream 1777514 33070249 ~ 33119328 (-)

Expression


Co-expression Network