AMCG00014894 (gtpbp1,gtpb1,LOC106606809,LOC106601690)


Basic Information

Item Value
gene id AMCG00014894
gene name gtpbp1,gtpb1,LOC106606809,LOC106601690
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 38600421 ~ 38629200 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014894
ATGGCTTCGGTATCGGTTTCGGAGCCGAACCTGAGCCCGGGACCCATAGCAGCTGTCGAGCCGCCGGTACCCGCTTGCATGTTCGCTCCTGAGCGGGGATGCGGAGAGGACGCCGACGGGGCAGAGTGCTGCGACGACGGGGATATCTTCAACGGCGAGCCCGGGGATCACTTAGACTTCACCAGTAAGTTGGCCCTGGTGAGTCCTAGTGGGGAGCAGTATGACTCTTTGCTCAGGCAGTTGCAGGAGCGCGTGGAAGAGGGCTGTGGGGAGACCATCTACGTGGTGGGAGTGGGGTCAGATGGGGGTGACTACGGGCTGTGTGAGGCGGACATGCAGGCCTCGGTGGCGACAGTGGAATCCCTGTCACAGCAGCTGGGTGCCCACACCGTGCTGCTGAGGGAGCGCACTGAGGCAGGGGGGCGCGTACTGGTGGGCAACGTGGATGCGGGCAAAAGCACTTTGCTGGGCGTTCTGACCCATGGAGAGCTGGACAATGGCCGCGGTTTCGCCCGGCAGAAGCTTTTTCGTCACAAACACGAGATGGAGTCAGGCCGCACCAGCAGTGTGGGCAATGACATCCTGGGCTTTGACCACTGCGGCCGCGTGGTCAACCAGCCAGACAGCCATGGGGGCAGCCTGGACTGGACCAAGATCTGTGAGCGGTCCTCCAAGGTCATCACCTTCATTGACCTGGCTGGCCACGAGAAGTACCTGAAGACCACTGTGTTCGGCATGACCGGCCACTTGCCTGACTTCTGCATGCTAATGGTGAGGGTGCAGAGGAAGgtggGCAGCAATGCGGGCATTGTTGGCATGACGAAGGAGCACCTGGGGCTGGCGCTGGCGCTCAACGTGCCCGTGTTTGTCGTCATCACCAAGATAGACATGTGCCCTGCCAACATCCtgcaggAGACTCTGAAACTGCTGCAGAGATTGCTGAAGTCCCCTGGCTGCAGGAAGATTCCAGTGCTGGTGCAGAACAAGGATGATGTCATAGTCACCGCCTCCAACTTCAGCTCTGAGAGGATGTGCCCAATCTTCCAGATCTCAAATGTGACTGGGGAGAACATGGACCTGCTGAAGATGTTCCTGAACCTGCTAAAAGGAATGGTGATGGTGTCCCCACGACTCAGCCCTCAGGCCTCCTGGGAGTTTGAGGCTGAGATCCTAGTGCTGCATCACCCCACCACCATCAGTCCCCGATACCAGGCCATGGtGCACTGTGGCAGTATCAGGCAGACAGCCACTATATTGTCCATGAACAGGGACTGCCTGCGGACAGGGGACAAGGCGACTGTGCACTTCCGCTTCATCAAGACCCCGGAGTACCTGCACACCGAGCAGCGGCTGGTCTTCAGGGAGGGCCGCACCAAGGCCGTGGGCACTATCACCAAGTTACTCCAGTCAACCAATAACCTGCCCTCCAACGCCAAGCCTCCACAAATCAAGATGCAGTCTACCAAGAAGGCAGCCCCGCCTCGCAGGGAGGAGGGGCCCAGCCCTGCCAATGAGGAGATGGCGATCTCGGGGCGGCCGGCCAGTCCACACACAGCACCGCCAGTGGGTGAGGAGGATGTACAGAAAACAGACTCCAACAAAGAGAATAAGGCTTATATCTCCAGTATCCAGTAG

Function

symbol description
gtpbp1 Predicted to enable translation elongation factor activity. Predicted to be involved in translational elongation. Is expressed in intermediate cell mass of mesoderm; intermediate mesoderm; lens; solid lens vesicle; and ventral mesoderm. Orthologous to human GTPBP1 (GTP binding protein 1).

NR:

description
PREDICTED: GTP-binding protein 1-like isoform X1

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K24887 GTPBP1; GTP-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014894 True 1635 mRNA 0.59 12 38600421 38629200

Neighbor

gene id symbol gene type direction distance location
AMCG00014889 NA coding downstream 176580 38415402 ~ 38423841 (-)
AMCG00014888 cacng2,LOC103372897,LOC102214005,LOC101463732,LOC100710835,LOC108237679 coding downstream 197627 38363902 ~ 38402794 (-)
AMCG00014886 syngr1,syngr1a coding downstream 261058 38330131 ~ 38339363 (-)
AMCG00014885 NA coding downstream 283404 38303052 ~ 38317017 (-)
AMCG00014883 NA coding downstream 336937 38261530 ~ 38263484 (-)
AMCG00014895 NA coding upstream 47209 38676409 ~ 38688061 (-)
AMCG00014897 NA coding upstream 99789 38728989 ~ 38836352 (-)
AMCG00014902 NA coding upstream 509623 39138823 ~ 39176661 (-)
AMCG00014901 NA coding upstream 575847 39205047 ~ 39217098 (-)
AMCG00014903 NA coding upstream 633941 39263141 ~ 39270244 (-)
G74137 NA non-coding downstream 24453 38506192 ~ 38575968 (-)
G74128 NA non-coding downstream 111942 38488262 ~ 38488479 (-)
G74093 NA non-coding downstream 260205 38309085 ~ 38340216 (-)
G74052 NA non-coding downstream 316904 38281437 ~ 38283517 (-)
G74030 LOC106607450,LOC105029658,LOC103393291,LOC102224681,LOC103147375,LOC101072687 non-coding downstream 419823 38177974 ~ 38180598 (-)
G74167 NA non-coding upstream 19722 38648922 ~ 38649290 (-)
G74174 NA non-coding upstream 32938 38662138 ~ 38662455 (-)
G74206 NA non-coding upstream 93404 38722604 ~ 38750977 (-)
G74221 NA non-coding upstream 146504 38775704 ~ 38776755 (-)
G74223 NA non-coding upstream 158761 38787961 ~ 38788273 (-)
AMCG00014891 NA other downstream 107467 38488619 ~ 38492954 (-)
G74115 NA other downstream 167546 38432263 ~ 38432875 (-)
G74107 NA other downstream 187190 38412160 ~ 38413231 (-)
G74087 NA other downstream 250130 38343322 ~ 38350291 (-)
AMCG00014865 NA other downstream 735938 37802094 ~ 37864483 (-)
G74247 LOC100136012,LOC107575789 other upstream 268895 38898095 ~ 38920353 (-)
G74375 myh9,LOC100380669 other upstream 628862 39258062 ~ 39260360 (-)
AMCG00014906 NA other upstream 748975 39378175 ~ 39379153 (-)
AMCG00014914 ankrd54,LOC107563363,LOC107728844,LOC107559232,LOC107670919,LOC107719341 other upstream 961296 39590496 ~ 39591658 (-)
G74477 NA other upstream 1008699 39637899 ~ 39638957 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025515 gtpbp1 coding NC_007114.7 CM002887.2 33440615 ~ 33459764 (+)
grasscarp (Ctenopharyngodon idella) CI01000030_00476829_00484029 GTPBP1, GTPBP1L, GTPB1 coding CI01000030 null 476829 ~ 484029 (+)