G68224 (rbbp7,LOC105893332,LOC100695351,LOC103023991,LOC106520888)


Basic Information

Item Value
gene id G68224
gene name rbbp7,LOC105893332,LOC100695351,LOC103023991,LOC106520888
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 3463435 ~ 3464792 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU85251
CTGGTTTGGAGGGGTGTTTGGTGTAGTCGAACACCAGCACGTCCGAAGTGGGCGTCTTAGTGGCGATGACACAGGGGTTCTGCGGCATGTACCTGGCCCGGTTCACCTCCCCCTCGTGGTTGATCTTGATTTCGATCTCGATCTTCCCGCTCACCGACCCAAACCCTCCAaattctgCTCCTTTCTCGCTGTCGTAGTGGGACGTGTCGAACTGCGCGTCGTCGTTGGGGATCTGGACGCTGGCGATGACCAGGTGGTTCTGCTCGTCCGAAGTGTGCGTTCCCAGCACCAGCCTGTGGATGGCGTAGTCCTTCCCTTCTGGCCTGCACACACAATAGCAAAA

Function

symbol description
rbbp7 Enables histone binding activity. Involved in cellular heat acclimation and negative regulation of cell growth. Located in cytosol and nucleoplasm. Part of ESC/E(Z) complex and NuRD complex.

NR:

description
PREDICTED: histone-binding protein RBBP7 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU85251 True 343 lncRNA 0.58 2 3463435 3464792

Neighbor

gene id symbol gene type direction distance location
AMCG00014178 zrsr2,LOC107729896,LOC106575977,LOC107602790,LOC107753840 coding downstream 972 3454811 ~ 3462463 (-)
AMCG00014180 NA coding downstream 31102 3410978 ~ 3432333 (-)
AMCG00014172 LOC108425706,LOC106572425 coding downstream 88282 3372298 ~ 3375153 (-)
AMCG00014168 scml2,LOC104928288 coding downstream 211588 3250317 ~ 3251847 (-)
AMCG00014167 NA coding downstream 226407 3229180 ~ 3237028 (-)
AMCG00014179 NA coding upstream 7129 3471921 ~ 3479370 (-)
AMCG00014177 LOC106574796,LOC106593175 coding upstream 15557 3480349 ~ 3487826 (-)
AMCG00014185 NA coding upstream 101719 3566511 ~ 3573447 (-)
AMCG00014190 LOC106581913,LOC105898087 coding upstream 192285 3657077 ~ 3678256 (-)
AMCG00014189 LOC106581913,LOC105898087 coding upstream 235277 3700069 ~ 3700761 (-)
G68162 NA non-coding downstream 235285 3226865 ~ 3228150 (-)
G68124 NA non-coding downstream 430671 3029109 ~ 3032764 (-)
G68077 NA non-coding downstream 658271 2776259 ~ 2805164 (-)
G68078 NA non-coding downstream 661391 2782510 ~ 2802044 (-)
G68076 NA non-coding downstream 692775 2769838 ~ 2770660 (-)
G68304 NA non-coding upstream 492210 3957002 ~ 3957266 (-)
G68324 prps2,LOC108413289 non-coding upstream 631423 4096215 ~ 4098475 (-)
G68325 NA non-coding upstream 634772 4099564 ~ 4099927 (-)
G68336 NA non-coding upstream 640726 4105518 ~ 4129741 (-)
G68386 NA non-coding upstream 833513 4298305 ~ 4299684 (-)
AMCG00014181 ppef1,LOC105893339,LOC108425737,LOC107695075 other downstream 68681 3385757 ~ 3394754 (-)
G68088 NA other downstream 634291 2825562 ~ 2829144 (-)
AMCG00014144 NA other downstream 810188 2641059 ~ 2653247 (-)
AMCG00014134 NA other downstream 920738 2531954 ~ 2542697 (-)
AMCG00014119 NA other downstream 1338482 2085941 ~ 2124953 (-)
AMCG00014228 NA other upstream 2194280 5659072 ~ 5678499 (-)
AMCG00014241 NA other upstream 2594697 6059489 ~ 6108358 (-)
AMCG00014271 NA other upstream 3913296 7378088 ~ 7386984 (-)
AMCG00014276 LOC106575771,LOC106574874,LOC107705522,LOC107584803,LOC105911816,LOC105019730 other upstream 3937360 7402152 ~ 7411890 (-)
AMCG00014278 NA other upstream 3948937 7413729 ~ 7423291 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G429842 NA non-coding CI01000305 null 392445 ~ 393725 (-)