G69406 (tgfbrap1,LOC102780916)


Basic Information

Item Value
gene id G69406
gene name tgfbrap1,LOC102780916
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 10003058 ~ 10008648 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU86705
AGTGTCATAGTGACATAACATGGATACTATGGTGGCCTATGAGGGGAAGCCATGTCACATGACTTGAGAGGATTCTACAAACTCTGCCAAATGCTTcttcaaaacaaatcataaatatcaatttatttattttgtaattatttttgagaagaccatttctgtttttgtgacaTACTCAGgaaaatattcataaaattgAAAATCTGCATTCTAACCactcaaaaaactaaaaactaaaataatgagaCTGTGTTGAGATTAGAAGCCCTTACCTAGCAGCAGCTGCACTCTACAGATACTGGACTGCCGCAGCAGGTTTTGCAGCTTGGCCCTGGCACAGGTTAAATCCTCTGCAGGCGTGGCGCTCTGAGACTGTAGCTGCAGTACGCTATCGAGGTAGAGCACTGCCAGCCATGGAGCACTATCCAGAAGGAGACACGAATTCTCAGAAACCAACAAGTCCAGCAGGCTTTCATGGTTGGCTTCCGCATACAGCTTCAGCAGGGCCGTGTCGACATCATCCCTGTAGCCGTTGGCCACTTCGGTGCTGCGGATCTCATTCAAGTAACTGATGAGAAACCTCTTGCACTTGAGGATCTTCTCCTGGTCTCCCTGCGTCAGATGGTTGAGATCGGCGAACTCATGGAGTGGAGGGTGGCAGCGTGTGAAGGTGGACGTCGCCGGCAGGAGCAGAGGACACAGGGAAATAAGTTCTCGCACATCCAAATGGCCTTTCCTGCAAGGATCACATCAAGAAtgctgaaagaaaatacatacatagaccTAAAATCCTGCTCGCGAGTACTTTACATACATGCAGGTTTGAAGAATGCACTGCTTTGTTAATTAGGAAAGACATATTGAAGTACTTCAAAGTTCTGtccaatttttaaattattgaagtGCACGATCACTGATAAATTACACATAAACCCTATACTGCAAGACATCTAAACCCTCAAAGAGCAAACAACTGGGACTCTGCATTTGATCTGTGATAATGATAAACACTACTTTCAATAATGCAAAATAGCAATTTAAATCTCcatgttttttagtttaaatgtgttgcattgtaaaaaataaaatgacacacaaTAAGCAGTAGGATCAATTATGTTAGAACCTGAAGTCACCTGAAGTGTTCTTTAGCTTCTAAAAACTGAAGCTGTCCAAACTGTATGAATCCTGCTTGCTGAAGAATTCTTCTGTACATTATCTGGATGAAAAAGGGAAATCTGTGTTAGTATAAGAACactaaaagtaaaaacacaattcaaaccAAATAAAGATCTCCCTTCAGATGTACCATCATGATAAAAATGCATCACATTCAGTAAAAAACATTGGTATAGCATAACCAAACTAATTTAATTGCAACATTGTCTGTTAtgtaactattttatattatttgtgtaggctatatttgtttatattttctatcagggagaaattaaagtaaacttttattttatattcaggaTATTCTGATGCAGTTGACCTACAATGGCTTGTTTTCAGCATATAAGAAAATgttggggggaaataaagtg

Function

symbol description
tgfbrap1 Predicted to be involved in autophagy and endosomal vesicle fusion. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in early endosome. Predicted to be active in cytoplasm and membrane. Orthologous to human TGFBRAP1 (transforming growth factor beta receptor associated protein 1).

NR:

description
PREDICTED: transforming growth factor-beta receptor-associated protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86705 True 1553 TUCP 0.39 2 10003058 10008648

Neighbor

gene id symbol gene type direction distance location
AMCG00014338 gpr45,si:dkeyp-118h3.5,LOC106581986,LOC107602888,LOC107688775 coding upstream 8387 9993673 ~ 9994671 (+)
AMCG00014335 NA coding upstream 21465 9959233 ~ 9981593 (+)
AMCG00014334 LOC107748535,LOC108247996,LOC104928562,LOC103473625 coding upstream 86269 9914125 ~ 9916789 (+)
AMCG00014337 NA coding upstream 94796 9841023 ~ 9908262 (+)
AMCG00014336 NA coding upstream 194178 9803957 ~ 9808880 (+)
AMCG00014343 NA coding downstream 6855 10015503 ~ 10071601 (+)
AMCG00014342 nck2b coding downstream 116506 10125154 ~ 10145702 (+)
AMCG00014344 NA coding downstream 147817 10156465 ~ 10162165 (+)
AMCG00014352 NA coding downstream 220352 10229000 ~ 10242261 (+)
AMCG00014351 LOC107688773,LOC102224404,LOC106959393,LOC103459619,LOC108266990,LOC107099852 coding downstream 299774 10308422 ~ 10318002 (+)
G69384 NA non-coding upstream 93010 9901450 ~ 9910048 (+)
G69326 NA non-coding upstream 626708 9366537 ~ 9376350 (+)
G69232 NA non-coding upstream 1112224 8890586 ~ 8890834 (+)
G69206 NA non-coding upstream 1267119 8734323 ~ 8735939 (+)
G69023 NA non-coding upstream 1866848 8133288 ~ 8136210 (+)
G69428 NA non-coding downstream 45843 10054491 ~ 10054711 (+)
G69431 NA non-coding downstream 46729 10055377 ~ 10055733 (+)
G69457 NA non-coding downstream 215023 10223671 ~ 10224035 (+)
G69499 NA non-coding downstream 484499 10493147 ~ 10493396 (+)
G69540 NA non-coding downstream 828556 10837204 ~ 10838230 (+)
AMCG00014272 tbc1d23 other upstream 2520498 7464503 ~ 7482560 (+)
G68848 NA other upstream 2586464 7413640 ~ 7416594 (+)
G68830 NA other upstream 2653591 7346195 ~ 7349467 (+)
G68475 NA other upstream 5351094 4649200 ~ 4651964 (+)
AMCG00014196 NA other upstream 5871340 4127476 ~ 4131718 (+)
AMCG00014345 NA other downstream 139331 10147979 ~ 10151913 (+)
AMCG00014407 LOC107725344 other downstream 3237661 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 3646590 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 4180916 14189564 ~ 14205014 (+)
AMCG00014461 NA other downstream 4293799 14302447 ~ 14356868 (+)

Expression


Co-expression Network