G75272 (LOC105025081,LOC108431941,LOC108274116,LOC107734154)


Basic Information

Item Value
gene id G75272
gene name LOC105025081,LOC108431941,LOC108274116,LOC107734154
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 42119287 ~ 42131232 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU93975
GAAGGGCCTGAATCTGAGGATGAAGTTCGTGTGCGGTCAGTGCTGGAGGGATGGCCAGGTCAGTGAGCCGGACAAAGCTCTGAAGTACTGCACCGCCAAGGCCCGGCACAGCTGGACGAAGGAGAGGAGGGTGCTGCTGGTGAAGTCCTTTGAGAAGAAGAAGTGGGTGGTGGTCCGGCCGCTGCCATTCTCCCGCACCTACCCGCTGCAGTATGACATGTGTGTCCACGTGGTGAAGCAGAAGAAGTGCCACTACATTGGGAACTGCTCGTTCGCGCACAGCCCAGAGGAGAGGGACGTCTGGACATACATGAAGAACAACAGCTtGAGAGACATGCAGCAGATGTATGACATGTGGCTCACACTGACCAATCAGAACCGGCGGACGGAAGGCCCTGCGCTGACCCCGCCCCCCGAGGAGAAGCAGATCACCATGCCGACGGACTACGCAGAGCCAATGGATGGAGGGCGGGGCCTGTCCGGACGGGGTGAGCTGTGACTTCGCCCACAGCCCCGAGGAGCTGGCAGAGTGGCAGGAGAGACGGGACTTCTTGCGGAGGAAGCTGGCGAAGGCGCGGGAAGACATGCTGATAGCGCCCACTGACAGCGACTTCGGGAAGTACAGCTTCCTCCTGCAAGACTGACACCCCCCCCacctgcactgcacagcacaacaagacaaacacactcgcacacacagcacacacagagagagagagagagagtgagaccgCACGCGCGCGCATGtgcgcgcgcgcacacacacacacacacacacacacacaagactgaTACTGTAGGAAGTCCAGACAGACTGCACAGTTGGTGCTGACCTAAGCAGCACGCTGAAGGAGAAGCGGACTGTTCCATGTTCTCTCATTTGGGGTGGGTCATAAGTGTTTCCCTGTTAAGACCCTTTTGTCCAAAagacaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacacacagTGCCCTGACAAGATACAATtagcacatatacatacatgcatctATGTACTGTATAGAGTCCTTCTGTGCTGGTGCGTGTGTATATGACAGAGCAGTCTCCTTCCCACAGGCCCCTGATGCAGGCTGCATCACGACCATTACCATAATTAATTCAACTGTTTGATAATGCAAattcttttattgttattatacttcagcaaaccattttaatttaccAGTCAGATTAACCAGGGGTATTGCAGCTGGTGCGCACTGGGACTGCAAGCATCTTCAGTACGAATCTAACAGATCTGTAACACATCACATGACACACTAACACATATAACCGTAAATATATCACTCGTTTCTCTATATGGCTTCCTCCATCAAGACGTGTTGCCCATTTCCAGTCAGAAGGAATGTAATAGTGCGCAACCCACATATTTATGAATCATGTTAAAACGTGTGGATTATAGATCAAGATCTACAAGATCTATTTGAAATGCATCCCATAgatttgaaatgtgtgcaaaaaggaggaggagggaatgAGGAGGTGGGATGGGCATCTTTGTACCATGTGATAAAGAGACTTTCTATGTGTAGAGGGGCTGCCTCTCTGGATGCCAGTTGGTACATGGGTTGATTTGCCCAACACATATCGAGGAATATTCAAGTCTCGTGAAGCTATCTGGGTCAGCTCACGATCCTCAACCTCTTGCATGACTCCCAAGGGCGCCTCCCTCCTGCACTGCACCATAATCCTAGTCCCAGACAGCGCAGGGCCGAAGGAAGGCCAGGGATGGGCGTTCATAGGGCAGCTTTGGCTAAAATGAATGAACAGCATCAAAAACTGGACAGCCCACACTGCCAGTGAGCGGTCCAGTCCTGGTTTCGCTGTCAGCCGGATTGCTACACGGcatcccctctctcccctcctcctctgaaACCTGTTGTggtgccccctccccccacattAGCAACTGTTCGTAGTCCAGAGTTCAAAGGGCGCCAATGTATGAGCTCTAAGATTTTTTCACCACAGCGCCCGGGAGAGTTCTGTGCAAGTGACTCACCCacactcactcatacacacCTGAAcattgtgtgtctatgtgtacatttgtatgtgtaGGAGTGTCACCAGTGCTAATTTTATTCTGACAGGGTGCTGTGTACACCTCACTGTGAGGCTTGTTATTGGAGCACAGAGCTCCTGTATGTCTGGGGCATCAGAGACAGGAACTCAGCGCCAGTCTTCCCAGTCTGTCCAGCACTGCACATCCTGACAACAGTcctcaaacacttttttttttaatcctttagATTTTGTCTTGTGTTCCTGTGTACAAATTCTACATAAAGCCCTGTTCCTCAATTGACAAttgatttttgttatttttataattaatatattttttgtattattcatcaAACCATTTCAGTGACTCTGTGGAAAACATTCTCATGCACTTGTGCAGATGCAtacaggtacacacacacacacacacacatcacagtaTTTATTGACTGGAAGCATCAAATCACATGGGGAGGGAAGATGGATGGAGGAGGGCAGGGATCTCCTCTTTGGGGGGAACAAGGCAGCCCGGTCCCAACCCCCCCAGTTCTAGCTGGCAGGGTTCTGGACACTTCTGTTGTGAGTCCCCAACTTTGGACGTGACTCCCGGGGACGGTTCCCTGATTTCAGCATAACCATGGTCTGGGCAGCCCTCCCAAGGGCTTTGAGACGCACGAAACAAAACGAGGAGGTTTCCACCCCTGACTGACAGTCTGACTTACTGacttttgttggtttgcattCCTGCTGTGTTCACCATCTGCGGACGGGGTGTTTAGAAAGGGAACACAGGGTAGGAAGTGGCAGGAGGCAGCCTTCGCAACATAGTGAACAGCCTTCTCCAGTAAGGCATCTACACCTGCCTGCATAtacctgaatatatatataggcaacACTGCTTTAATCAGCCAGCCCTTGCCCTGATATATCATGAGACTGGACCCAtatgtccacacacacacacatacatacagatatatatatatatatccattacaatattatatgagaacaatgaataaaaacatcagtatactaataataattaataataaatttaGCTGTTAAGCTTAATTAAACCATAACCTTATCTTGTTATTGATTATATATTaccctttattttgtgttattgatCTGTATTGCTCTGCCCTATAATGGCTGTACTATGCAGTGTTAGACTGTAGATTTTCTGCTTGTtagggagggaggtgggggtcATTCTGATTGAAGAATTGGTTTGTTTATGGTTTGTTCTTTCAGGGTGTGCATagtgggaggaggaggtggggccAGGGCCAGTGTCTGCACTGGCTGGTTAGAGGGGGTGCTCTTCTGTGGTTTTGTCTGTGCAGTACTGTAGTCTTCTGTACAGCAGGGTCTCTAGTCCTGTCgagacagtacagtacagcacagtctccagccctggtcctcaAGAGAGTGCTGTtgggtgctgtgctgtactgtagctctccagCACCATCGCCGACCGCAGTGGAGGTGGCCCAGCTCTGACCGTGGTGTCAGACACTTCTTGGTGTGCACATGAACAGAACAGAGGGATAACTGCTGAAGGGAATGACCCTgagtatttgcttattttttggaggtattcttattttgtattattattattactattattatgattacaattATTACTAAAATTATGATTActactattgttattatatattttttcgtTGCTTATATGCTATTGATATGTATATGTTAAATGCCATTCATAGCTCCCTTTatagctgtactgtactggactatagagtgtacagtgtgtgggCGTCTGTGGGTGAACCCTGTGAGGGCTTTGACACCCCTCCCCTGCACTTTCCTGTAGCCAGCTAGACCGATGCTAATTTATTCtcactataattattataatgtgctGTATTCCACCAGTTGATCAGTAGTTGATTCATTGGATGGGTAATTGATTCATTGGATGGGTATTTGATGGAttgagaaaacaagaaacaccGACTAGATAACTTTACCTCCTTGGCAGTAGCCAGTGTCACCCCCAGACGTCCACATTCACCTGCATTGccttatactatatatataatgatatctatataaaaatataaaaaaagtattatctTATATGTATAATCAATTCTTTctctattataaatatatatacttatataaatataaacttagACACTTTAATTGGAACATAAACGTGGGGGGTGACTGGGTCTGTGTCGAATGGCTGTGGTTGGTTTGTACCAGTGTCTTAACTCAGACTCcatagatatacatatacatgatTTCACctcagtggagggagcagaagTGCTCAAAGATTTACACttaccctccctccctctgtcacacttacacaaacacacactctttcGCACACATGgacggtctctctctctctctctctctctctcaccttcctCTGTCTCCACACAGCCCCACTATTGACATTCACACCATTACACCTTAACCAGCAACACAGTATCAAAAGGAAGGCAACCACCCAAAGGACACAGATGCCACTCTCACTTACGTCGCCACACAACTGGGTTACACTGGGCTGGGGGGGACCTGCAATCATGGGtctgccagtgttgtgaaacgGGCCCCAGCAATGCACAGCCATTCGATTACAGCTAGTTCCACCTCTTAcctaataaaaatgttacacagAAAAGAAACGCAGGGTGGGGTGGTGAGAGAACAGATATCCAgcgattttctttattttcgaTATACACCAAGACAGGGCGTGGAGATAATCTAACaggtttaaaaaggaaaaaaagaaaaataaaaaacaggaaaaatatattttttaaaaatatggaaaaaaatcttttttttttgtggtagatttttatgttttctgtttctctttttttcttttttctcctcgtGTTGAAAATCACAATTTGGAAAGTGGTGGtgataattatgatgatgatgatgatgatgacaaatGGACCAAAATCTGAGATTAACAATAAACGGAAGATGTTTTAAAT

Function

NR:

description
PREDICTED: zinc finger CCCH domain-containing protein 7B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU93975 True 5047 TUCP 0.46 5 42119287 42131232

Neighbor

gene id symbol gene type direction distance location
AMCG00015006 tef,LOC101073097 coding downstream 7146 42106897 ~ 42112141 (-)
AMCG00015007 aco2,LOC107554054,LOC107692062,LOC107584097,LOC107734200,LOC107731401,LOC103370792 coding downstream 22003 42083044 ~ 42097284 (-)
AMCG00015008 NA coding downstream 48324 42063997 ~ 42070963 (-)
AMCG00015001 NA coding downstream 81087 42023102 ~ 42038200 (-)
AMCG00014990 NA coding downstream 130580 41985975 ~ 41988707 (-)
AMCG00015009 NA coding upstream 3681 42134913 ~ 42147238 (-)
AMCG00015017 NA coding upstream 52456 42183688 ~ 42196495 (-)
AMCG00015016 NA coding upstream 65265 42196497 ~ 42213025 (-)
AMCG00015015 f10a1,st13,LOC106607171 coding upstream 95666 42226898 ~ 42234065 (-)
AMCG00015020 NA coding upstream 178491 42309723 ~ 42313025 (-)
G75247 NA non-coding downstream 97206 41993563 ~ 42022081 (-)
G75241 NA non-coding downstream 127310 41977755 ~ 41991977 (-)
G75170 NA non-coding downstream 304026 41812333 ~ 41815261 (-)
G75145 NA non-coding downstream 446245 41651336 ~ 41673042 (-)
G75333 NA non-coding upstream 36292 42167524 ~ 42167876 (-)
G75364 NA non-coding upstream 155062 42286294 ~ 42286584 (-)
G75365 NA non-coding upstream 155426 42286658 ~ 42286893 (-)
G75367 NA non-coding upstream 157957 42289189 ~ 42289415 (-)
G75368 NA non-coding upstream 158358 42289590 ~ 42289858 (-)
AMCG00015010 csdc2,csdc2a,LOC105919973,LOC108235856,LOC103382071,LOC101165181 other downstream 55386 42060290 ~ 42063901 (-)
AMCG00014981 NA other downstream 352461 41755606 ~ 41766826 (-)
AMCG00014978 NA other downstream 557320 41538286 ~ 41561967 (-)
AMCG00014971 NA other downstream 644806 41470294 ~ 41474481 (-)
AMCG00014964 kdelr3,LOC108262534,LOC107679478,LOC106607138 other downstream 787517 41329313 ~ 41331770 (-)
G75370 NA other upstream 160689 42291921 ~ 42292295 (-)
AMCG00015023 NA other upstream 189864 42321096 ~ 42325005 (-)
AMCG00015031 NA other upstream 377637 42508869 ~ 42521901 (-)
AMCG00015028 NA other upstream 392100 42523332 ~ 42534278 (-)
AMCG00015035 NA other upstream 425397 42556629 ~ 42589623 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005313 zc3h7bb coding NC_007123.7 CM002896.2 19158832 ~ 19185865 (-)