LOC122350977


Basic Information

Item Value
gene id LOC122350977
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 22526122 ~ 22530488 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251667.1
gaaaaccCTCTTCTAGCCTGTGGATAGCAGACCTCTTGTATTCTTGATCAGTATGCCTCTATTTGACTGTAACTATTTCCAGACCTCCTGCCTGCTTGGTTTGCCTATAGTGCAGGCCGAGCCACAATAGCGTCCCGCCGCGCTGCTCCGGCTGCCTCCATGCTTTCAGGCAGAGCAGAGCCTCGCTGCCGTGGTGATTCATTATTCCGTTGCCCCCAGTGACCGGGAGCAGGCCAAGCCCCCTCCTGCCAAACAGGCCACTAAGTGGCAAGAGACGAAATGAGTGACATTTCCTAAATGTTCTGACCTTTGTTTTCCCATTGAGTCAGTTGCCATGTAGGAGAAAAAAGTAGTGTGCGCTCTGAAAGTAGTGTGCGCACATACGCTTTTGAGCTGTTTGTTTTGctactgtttgtttttctagttAAAACACTCATCTGTTAGCGCGCCATGATGTATTGATATTTAAGTTAGGGATTGCATGaatctaataaaacacaaagaagtAATATCACAATGTGAAAGAATGcgttttaataaatgaacaattcAATAAAAGAATCTTTATGACACTAAAGAACCCTAACAACCGAATAAAGAACCCATAACCGAACCCTCTCCATCCACTtcaaattttctttaaattatgaaatatttttggcgaaccatttttggttcttCCATGGATGTTTGCGGTTCTTCGCGAAACCATATAGAAACCAactaaaaagctttattttcaaGCCCATACGTGACCTGGGCATGTTTCATAAGACCCACCTATGGAATTTTATTAGCTTACAGAAATAACAACTCGATGAATTTATGAGAGATCACGGCTAATCTACTTTCAAAAATGACgtgttttaaatgcagattttgACGCTTGCTTTTGTTCTCAGAAGTCACGCGGTATCGGACCCACCCCGCGTGCCCGAGAGTCCGCATTTGTCGCGCGTTATAAATGGCGTTGATCTCGCGCTGCGCTGCGTGCGTCTCGAATCTAAACCACGGTCGCCACTTTAAGCCGCTGACTCCAGACCTCGATAATAACATCCTGACTGCCCACCGGAGCCCCAGAAATCAAGCTTGCTACGGACGCTAGCGCTGTAGCGGCTGCTCGGCGAGACCTGTCGGTCACACAGAGCCGCGCACCCGCCGCGCTCGGACCAGCGCTAATTGGTTGACTAATTGAACTCTGCGTGCGGCTGCCCTCCGTTCTCGGTAATCAACATGTGTTTCAGGCGGTGGAAGATTTCTCAAACTTCggctattattttttatggcCATTTCATATTCTTGGCTTTTAATGTTCAGACACTAATAAGCTATTCATATTCGTCttatttaaatatctatataGTTTAAAAGACTTTTTACAGCTCGTTGGGTGTTCTCTGCTTGTTTATTTACTGGTCAGCTCAAAATGTACCTGATCACCAAGGCTGCAGCAAATACACAACAGCATTTCCAGTCTATCAGATAGAATTTCTCAGAAACCCTCTATCATGAAAGATTAACGTTTGTAAAATAGTAAACTCCTATTTGAAAGAATGTTCTTCAGAGACCCCCTGGAGAAATTGAAGGGACCCTCGGGTAGAAAACTCCGGACGCATTAAACATTAAgactattattttctttaaaatgactgaTATGTTCCTCTCTGGTGCTGCGTTTCCACACAGTAGCATCACAAATTAGATCATTTTTAtatgtgtaatgtaatatagATCATATTAGTATATCTATTGTCGATATAGCTTTTGAAATATGATTTGTATTGATCCccctacacaaacacacaccatatgtacatatataaatagagaAAAAGAGCGAGAGTTAAACTCTGTTAAGCTACGTGATCTTTGAAAATGCAACCTCAGAATTTAGAGACCCAAACACACaaagtctctgtctctcttcacTCCTCACCTgtctctatctttctctttcagCTCTTTCTTTCCCTTCTTCTTGGCTTCCCTTATTCTCTGTTCTGTGGTTTGGCATCTCTCCATAGAATAGGATTCAGGAAGTTTGGCTGGCTGCGCAACCATTTCATATGCCTGTTTTACAGGGAAAGCAGTATTTGTCTTTGTGTGAGAGACAGTCACCTTCATCTCCACACAAAATCCTGTGTCTACAGCCGACCCTGACCTCTCTGTCACCCGCGTGATTCACCAGGTGCTGTACTGCATGAGTGGAGGAATCTAGCCACGGCTCTGAAATGTGAAGATGGATGTTGCAGTTATTTCTATGgacaCTGATGCAATCAAGTGGAGATTCATCGCTTTGACCAGTGGAGATGATCAAACGGAAGGACTCTGGAGAACTGAGTGGAGGTTATTTATGATACAGAGATTGACTTTGCACTATGCACTGccaccacaaacacacaaatcaaaatcattttgtttcagGATTCTGTTTAACATGCTTGATTTCTGAACAGTCCTTTTATTAGGTGTGAATGTCCATTAGTCTAATTAAGAAAGCAGGGCTTAAAATTTACTACATTGATTtttcgacaaaaaaaaaaaaaaaagaagaagaagcagcagGTTTTAGACATTGATgggctttttttctttacttgcTAGCAGTCAGGTACACTGAGGGAGGCTAATTACCTCCATAACAATAGGAAATAACTAAATGGACTCATAATGACTTACATTCAGAGTAAAGACAATGACCTGAGTCTCATCATCCAATCCAACCACATACTGTAGAGTGAGATGAGAGATACTACAATTCAACCATCTGCCCAATCGGATCAGAGCAATCAGCTTCCTAAACCATTCGCTCATTCGGCTGAGGCTCATTTCATACCTTTTAACCTCTCCTTGCTCCCCAGGCTTGGCTTTTAGTATGACAGACAAAGTGTGTAGGGAGTATCTAATGGAATGGACCCAGCGGGGTGCGGGCTGCTTTTGGGACTGAGCCGGGGCCTAATGTCAGGTGAACAGGAATATGCAGCAAGGTAGAGAGTGAGCGACCCGGGGTACCCCGCTCTtagtgagggggaaaaaaaagtgctacAATACTGATTTCTTAACAACTTCTTTCACTGTCTTACTCATTTTCTTCCTATTTTACCCTACCATCTTCACTCCTCGattctctcccctctctctctgtatcaTTCAAACGTTTGGAGTTagtaagatgtttttaatactattacagtttaaatgaactcactttaatatatttcaacatgtaattaattcatatgATGACAAAGCTGATTATCTATCCGTCTAGCCAAAATGTATACCGTCACTTTTCACAATTTAATACCATTGCTGACTAAAacgtattcatttattttcaatttttgtgaaattaaaatgttttattatcagTTAAAAGAAAACGGGTTTTTGCCAAGAACATGGGATTTCAAGAATATTTATGCAAAGCTTTACGCAAAGCACTGTACATATTAACGCCTGCTTTCACTatgcactttttcttctttcagatcaTTGTTTCAGAGCTGTCTGATCTTAGAGTGTAAAAATGAAGctgaacattaaaatattctaaagcAACCTTTTTTGTAGACTATCATAATGCTGTTACCTGAGAAGTGCTAAATGAACTATTCTGCTCTTTTCAATTTTTATTCTCAGCATGGCTGAAAAGATAGCAGTCTAAAACTAGGAGGATGGGACCAGCCGTTCTCATTTTgttaacaaaatgtacttaatgGCTATTGTGGAATCATATTTCAATGGCTGAAGTGATTGGCCTGATATTAGAAACCATTTTATTACATGAATGTTTATAGTAGTGATGTTAATTTGTAATTCAGAAAGCTCCCTGATAATACTCTGTAATCTGTAATGCAGTAACAGTGCCCCCTTTTGAGTGGAGAGGCCCTTGATCTGTAACCTTAAAATAGACCACGAGTctgtgggtgagtgtgtgtgagctccTATAGTTTCTGTAAGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251667.1 True 3965 lncRNA 0.41 3 22526122 22530488

Neighbor

gene id symbol gene type direction distance location
sox1b sox1b,sox1a,LOC107746263,LOC107567792,LOC107676867,LOC107692134,LOC107718482,LOC107603037 coding upstream 7512 22515466 ~ 22518610 (+)
arhgef7b arhgef7b,LOC107567796,LOC107676887,LOC107718510,LOC107692139,LOC107746262 coding upstream 77819 22426984 ~ 22448303 (+)
eif5b eif5b,LOC107567794 coding upstream 99362 22414638 ~ 22426760 (+)
lipt1 lipt1,LOC107676853,LOC107712244,LOC107692196,LOC107567789,LOC107603034,LOC107715555,LOC107718931 coding upstream 111952 22412157 ~ 22414170 (+)
map2k7 map2k7,LOC107712243,LOC107692141,LOC107676852,LOC107718577 coding upstream 142153 22371229 ~ 22383969 (+)
tubgcp3 tubgcp3,LOC107692132,LOC107746265,LOC107718870 coding downstream 73249 22603737 ~ 22621251 (+)
mcf2la mcf2l,mcf2la,LOC107676858,LOC107692131 coding downstream 93064 22623552 ~ 22684618 (+)
cab39l cab39l,LOC107676861,LOC107718429 coding downstream 155351 22685839 ~ 22695741 (+)
arl11 arl11,LOC107676843,LOC107746302,LOC107560992,LOC107603040,LOC107718406 coding downstream 180505 22710993 ~ 22711961 (+)
cryzl1 cryzl1,LOC107560977,LOC107603049 coding downstream 372268 22902756 ~ 22909636 (+)
G5178 NA non-coding upstream 138594 22385266 ~ 22387528 (+)
G5159 NA non-coding upstream 290593 22232347 ~ 22235529 (+)
G5134 ddx39aa,LOC107712218,LOC107676896,LOC107603018,LOC107692155,LOC107551870 non-coding upstream 455988 22068067 ~ 22070134 (+)
G5132 NA non-coding upstream 484010 22041866 ~ 22042112 (+)
G5112 NA non-coding upstream 574787 21945811 ~ 21951335 (+)
G5206 NA non-coding downstream 8782 22539270 ~ 22539472 (+)
G5223 NA non-coding downstream 185048 22715536 ~ 22733117 (+)
LOC122346574 NA non-coding downstream 204946 22735434 ~ 22741631 (+)
LOC122331092 NA non-coding downstream 221998 22752486 ~ 22757654 (+)
G5264 NA non-coding downstream 277162 22807650 ~ 22809030 (+)
G5037 fbxo41,LOC107567034,LOC107692170,LOC107711519 other upstream 891070 21632215 ~ 21635052 (+)
rnf24 rnf24,LOC107689472,LOC107551705,LOC107567054 other upstream 905530 21590877 ~ 21620592 (+)
LOC122348864 ctnna2,LOC107706127 other upstream 1164682 21321462 ~ 21361440 (+)
pold4 si:dkey-28b4.7,pold4,LOC107730517,LOC107746491,LOC107664544,LOC107674245 other upstream 2282773 20241818 ~ 20243349 (+)
si:dkey-9i23.14 LOC107679868,LOC107750009,LOC107552619 other upstream 2380266 20142461 ~ 20145856 (+)
LOC122348949 LOC107676845,LOC107560973,LOC107718848,LOC107692180,LOC107603005,LOC107746297,LOC107735984 other downstream 310200 22840688 ~ 22851393 (+)
G5559 epc1a,LOC107568137,LOC107654560,LOC107753261,LOC107653121,LOC107582192,LOC107706605 other downstream 1012576 23543064 ~ 23554625 (+)
G5649 LOC107676039,LOC107729348,LOC107594453,LOC107578077,LOC107729349,LOC107676194,LOC107706808 other downstream 1752994 24283482 ~ 24293329 (+)
hadh hadh,LOC107594428,LOC107729339 other downstream 2026309 24556797 ~ 24558929 (+)
G5817 NA other downstream 2173360 24703848 ~ 24704319 (+)

Expression


Co-expression Network