prnpa (LOC107736233)


Basic Information

Item Value
gene id prnpa
gene name LOC107736233
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 17540826 ~ 17543078 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246070.1
TCTCAAACTCTCATCCATTCAAGCGCAGCAGACGAGAGAGGAGGACAACACTTGGACAGTCATCCTGAaccttcaaaaatacattttatccaCATACCAGTTCAATCATCTTCCGGCATGTTTTCCCAATATAAAGTCTTCTCGTTGATGAGCTGCCTGTTACTCCTGACGGTGATGTTTCCAGCGGTCCAGTCTCGTCGTGGCGGGGGCTTCGGGCGCGGAGGAGGCCGGGGCGGAGGATGGGGCGGCAGCAGCTCCGGACGTGCGGGCTGGGGAGGAGGCGGTGGACATTACCGTGCCCCACCAGCCCACACTGGAAGCTCCTCTGGACACAGCACTGGGAAGGTAGCAGGGGCGGCCGCCGCCGGAGCTCTAGGGGGAATGCTGGTTGGACACGGCTTGAGCTCCTTGGCCCGTCCCGGATACGGGTACGGGCACGGGTACGGAGGATATGGAGGATACGGAGGCTACGGTGCGGGGTACGGGCACGGCCACGGGTACGGCCACGGTCACGGACACGGACACGGCCATGGACACGAAGGACATGGTGGTGAGCATACAGGAGATCATGTTCACAATGAAACAGATGTGGATTATTATACAGATGCTGCCTGTTCTGGACCCATTTATAGCTGCGTGACAGTTTTTGGACTCGTGATGTCATTCTCACTCGGGTACTTTCTGTCATAAGGGCCACTTATAGGCCACTTGGTATGAGTCAATCTTGGGCACTTTCTGTTGCTTCtttca

Function

NR:

description
PREDICTED: glycine-rich cell wall structural protein 2-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0004784 superoxide dismutase activity molecular_function
GO:0005507 copper ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246070.1 True 750 mRNA 0.56 2 17540826 17543078

Neighbor

gene id symbol gene type direction distance location
rflna LOC107687957,LOC107553832,LOC107684501,LOC107576363 coding downstream 76247 17456142 ~ 17464579 (-)
LOC122350717 rimbp2,LOC107684511,LOC107753130,LOC108247306,LOC107081823 coding downstream 705266 16763297 ~ 16835560 (-)
LOC122350716 LOC107550565,LOC107659586,LOC107723226,LOC107723224,LOC107550564 coding downstream 1133428 16398576 ~ 16407398 (-)
setd1bb LOC107659604,LOC107550568,LOC107753154,LOC107669245,LOC107555095 coding downstream 1176882 16353908 ~ 16363944 (-)
LOC122350700 LOC107550582,LOC107723237 coding downstream 1196332 16313504 ~ 16344494 (-)
rassf2a rassf2a,LOC107687959,LOC107553834,LOC107742747 coding upstream 9442 17552520 ~ 17567609 (-)
slc23a2 slc23a2,LOC107753122,LOC107687958,LOC107684505 coding upstream 26342 17569420 ~ 17597847 (-)
crybb2 crybb2,LOC107565327,LOC107753119,LOC107684510,LOC107553840,LOC107687964,LOC107748132 coding upstream 154097 17697175 ~ 17699415 (-)
LOC122350049 LOC107748126,LOC107553823,LOC107687983,LOC107549670,LOC107697074,LOC107697075 coding upstream 158434 17701512 ~ 17706491 (-)
si:dkey-63d15.12 NA coding upstream 510281 18053359 ~ 18056277 (-)
G64724 NA non-coding downstream 127954 17411009 ~ 17412872 (-)
LOC122350118 NA non-coding downstream 175316 17362169 ~ 17365510 (-)
G64634 NA non-coding downstream 495855 17044454 ~ 17044971 (-)
G64582 NA non-coding downstream 850312 16651558 ~ 16690514 (-)
LOC122350842 NA non-coding upstream 114731 17657809 ~ 17660978 (-)
G64757 NA non-coding upstream 118271 17661349 ~ 17665132 (-)
G64777 NA non-coding upstream 202607 17745685 ~ 17745924 (-)
G64942 lzts1,LOC107712471,LOC107687967,LOC107550927,LOC107554439,LOC107753115,LOC107703152 non-coding upstream 486457 18029535 ~ 18032726 (-)
LOC122350292 hnf1a,LOC107687971,LOC107550982,LOC107712475 non-coding upstream 553017 18096095 ~ 18103013 (-)
LOC122350953 NA other downstream 139598 17320376 ~ 17401228 (-)
zgc:194007 NA other downstream 178976 17359385 ~ 17361850 (-)
LOC122350945 drd2b,LOC107745132,LOC107705176,LOC107691748,LOC107664308,LOC107600777,LOC107556418,LOC108428674 other downstream 444031 17046467 ~ 17096795 (-)
LOC122350093 NA other downstream 1131130 16407834 ~ 16409696 (-)
mvb12bb mvb12b,LOC107550570,LOC107753158,LOC107723228 other downstream 1839930 15649226 ~ 15700896 (-)
kcnip3a kcnip3a,LOC108440810,LOC107684506,LOC107553838,LOC107566017,LOC102307840,LOC108264878,LOC101482209,LOC103397788,LOC107753121,LOC107687962,LOC102210345,LOC108233759,LOC102228939,LOC102799407,LOC104951840,LOC102798027 other upstream 58180 17601258 ~ 17645511 (-)
LOC122350290 LOC107569538,LOC107747839,LOC107554410,LOC107703160,LOC107694233 other upstream 564375 18107453 ~ 18112701 (-)
G64967 NA other upstream 612057 18155135 ~ 18157543 (-)
tbc1d10aa tbc1d10aa,LOC107657331,LOC107712481,LOC107550973,LOC107753095,LOC107703173,LOC107554420 other upstream 847585 18390663 ~ 18401938 (-)
G65033 NA other upstream 1016589 18559667 ~ 18560334 (-)

Expression


Co-expression Network