G63405


Basic Information

Item Value
gene id G63405
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 5707971 ~ 5717250 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU72219
AGAGGAGACTAGACAGCCAGTGAGGCTGTTTGTGATGTACGATGGCTACACAGAGAGTGTTGAGGGCCACCAGACCCAGAACGATCCAGTAGAAGGTGTGAGTCTTCACCATACGGCGAATGGAGATCCGTAGCATGCGTTCTTTCCGTTGGAAATAAGACGTTGGTCCTCGTTTAGCACTGCGTATGCTGGCTCTGTTCAATGGCATCCCTACAGACGAGATGTCAGCATACTGTTCCTCTGGAGCTCTCCGAACATCATCCACCCCTCTTCTCTTTATGGTGGTGGCTCTTTTTAGCACGTCTAAAGCAGAAGGTCCTGAATTCTTATTCTCCTCTGCAAGCATAACCTCCTCTGCACGGTCGATCCAGGCCCGATACCCGTTCAGCTCCCTCTCGATCTGCTGCTGTCTCCTGAGCTTCATGAAGGCTCTTCGGTTCTCCACTCGCTCACGCTCTTTAGCGAACTCCCCTGACAGGACTCCTAACACCAGATTCAACACAAAGAAGGAGCCAATTATTATTAGAGGAATGAAGTAGAGCCAATTCCATGTAGGGCCTAAGGCATCGTTGGTATTATAGAGTATGGTTGTCCAGCCTTCCATGGTGATGCACTGGAAGACAGTGAGTATGGAAAATAAGATGTTATCAAACTGAGTGATGCCATCGTTGGGTCCGGGCCATTTGTCATTGCAGGTATAATTATCAGGACACAACCTGACCCCACAAAGTTCAGATTTGTCTGCATGAAATGAGAGAGACAAATTTTGTTTAATGTATCTGTGTCATTTCTCTGTTTGCTTTACTGTTTGTTATCATGCAGCTAATAGGAGGAGGCCTACAGAAAAAGGAGGTGTTTACTTCATGTAAAAAAGACTCTGATTTGCATATCTGTATCCCTGATTTTTTTCTTGCAAATGGTAATAATGTTATTTTTCTCAATACTAATGTTATATTTTGTTATTTAATAACATGCATAGGCCTTTTCACACTGCACTTAACCCCGGGTTATCTCCGTTCTAAACACCGCTTTTAACCCCCGGTAAAGAAACATTTTACACGCATTTGCGGTGTTAACCCTGCATTATGGTGCCAAACTTGTATAGTGTAAAACCATGCAGTGTTACAATGTTGCAGCTAGACGCTTAGCAAAAGACAACCAATTGCGTGCTCATATTTGCCTGCTTTGGACAGTCACGGAATCACTGCGCATTGTATATAAACAGTAAATTCAGCATTTGAGAGGCAAAATGTCAAATGCTGACAGAAAACATGACAATTTGAGTGGAGAATAGTTTTGTTCTTAGCTTTAGTCTGAAATGTCCATTCAGTATAAACTCGATAGTACAGTCGGCAATACAAGCATGCGTAATGCTAGAGCTGTGTAAACAGGTCACGTGCTGCGTTTATCCAATCAATGACACTGACACCACAAATATGCAAATAAGAACATTAACCCAGGGTTTAGGAATGTACAATGTGAAACATCAGCTTATGAATACCTAGGACTAATTGTAAACCCTGGGTAAATTATGAGCAGTGTGAAACGTGAGGCAAGATAACCCAGGATTCCGTTTACCCGTGGTTTAGAATGACCCAGGGTTAATGGTAAAAAAAAAAATTCGAAGAATGTGTTATTTGTGACCCTAAAAATGTTAAAAATTAGAAACCAAATCTTTTTTGTTTTTTTTTTTCCACTGAAATTTTTGTGAAATTCTGTTCTTTCTTTTTCAGTGTTCTAAAGACTTACACTGGATCCCAGCATCTGACATAAACATAAATGAAAACATGTATATCTAGGTACTCTAAGTTTGTACATATGTGGAAGTGTAGATCTGTGCATGTTCTTATACTTTTCGGTGTGTGACCGTCCTTGATTTTCACGCCTGGTTCACATTGCTTGTGTAGTTTTCCACTGTAGAACTCTAGTCCAATAATGGCAAACATGAGAATGGCAAAAAACAGCAGCAGACCGATCTGTAGCAGTGGCACCATTGCCTTCATTATGGATTTAAGAACTATTTGGAGAC
>TU72220
CAGAAACAGGACTGCTACATATCAGTCAGCTGAGACAGAAACTCACATTATAGAGTATGGTTGTCCAGCCTTCCATGGTGATGCACTGGAAGACAGTGAGTATGGAAAATAAGATGTTATCAAACTGAGTGATGCCATCGTTGGGTCCGGGCCATTTGTCATTGCAGGTATAATTATCAGGACACAACCTGACCCCACAAAGTTCAGATTTGTCTGCATGAAATGAGAGAGACAAATTTTGTTTAATGTATCTGTGTCATTTCTCTGTTTGCTTTACTGTTTGTTATCATGCAGCTAATAGGAGGAGGCCTACAGAAAAAGGAGGTGTTTACTTCATGTAAAAAAGACTCTGATTTGCATATCTGTATCCCTGATTTTTTTCTTGCAAATGGTAATAATGTTATTTTTCTCAATACTAATGTTATATTTTGTTATTTAATAACATGCATAGGCCTTTTCACACTGCACTTAACCCCGGGTTATCTCCGTTCTAAACACCGCTTTTAACCCCCGGTAAAGAAACATTTTACACGCATTTGCGGTGTTAACCCTGCATTATGGTGCCAAACTTGTATAGTGTAAAACCATGCAGTGTTACAATGTTGCAGCTAGACGCTTAGCAAAAGACAACCAATTGCGTGCTCATATTTGCCTGCTTTGGACAGTCACGGAATCACTGCGCATTGTATATAAACAGTAAATTCAGCATTTGAGAGGCAAAATGTCAAATGCTGACAGAAAACATGACAATTTGAGTGGAGAATAGTTTTGTTCTTAGCTTTAGTCTGAAATGTCCATTCAGTATAAACTCGATAGTACAGTCGGCAATACAAGCATGCGTAATGCTAGAGCTGTGTAAACAGGTCACGTGCTGCGTTTATCCAATCAATGACACTGACACCACAAATATGCAAATAAGAACATTAACCCAGGGTTTAGGAATGTACAATGTGAAACATCAGCTTATGAATACCTAGGACTAATTGTAAACCCTGGGTAAATTATGAGCAGTGTGAAACGTGAGGCAAGATAACCCAGGATTCCGTTTACCCGTGGTTTAGAATGACCCAGGGTTAATGGTAAAAAAAAAAATTCGAAGAATGTGTTATTTGTGACCCTAAAAATGTTAAAAATTAGAAACCAAATCTTTTTTGTTTTTTTTTTTCCACTGAAATTTTTGTGAAATTCTGTTCTTTCTTTTTCAGTGTTCTAAAGACTTACACTGGATCCCAGCATCTGACATAAACATAAATGAAAACATGTATATCTAGGTACTCTAAGTTTGTACATATGTGGAAGTGTAGATCTGTGCATGTTCTTATACTTTTCGGTGTGTGACCGTCCTTGATTTTCACGCCTGGTTCACATTGCTTGTGTAGTTTTCCACTGTAGAACTCTAGTCCAATAATGGCAAACATGAGAATGGCAAAAAACAGCAGCAGACCGATCTGTAGCAGTGGCACCATTGCCTTCATTATGGATTTAAGAACTATTTGGAGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72219 False 2029 TUCP 0.41 7 5707971 5717250
TU72220 True 1501 lncRNA 0.38 2 5715716 5717250

Neighbor

gene id symbol gene type direction distance location
CI01000010_05523602_05535371 BCAR3 coding upstream 180024 5523516 ~ 5535692 (+)
CI01000010_05494740_05504597 NA coding upstream 210455 5493967 ~ 5505261 (+)
CI01000010_05477048_05482911 NA coding upstream 232415 5476525 ~ 5483301 (+)
CI01000010_05414058_05426498 NA coding upstream 289029 5414058 ~ 5426687 (+)
CI01000010_05359191_05385419 NA coding upstream 330032 5359191 ~ 5385684 (+)
CI01000010_05789479_05790006 NA coding downstream 71082 5788332 ~ 5790204 (+)
CI01000010_05819188_05855120 CEP350 coding downstream 101938 5819188 ~ 5855163 (+)
CI01000010_05859214_05887437 NA coding downstream 141964 5859214 ~ 5888267 (+)
CI01000010_05902969_05911426 LHX4 coding downstream 185719 5902969 ~ 5912165 (+)
CI01000010_06014142_06037829 XPR1A coding downstream 296892 6014142 ~ 6038450 (+)
G63403 NA non-coding upstream 17251 5695445 ~ 5707085 (+)
G63399 NA non-coding upstream 21708 5691435 ~ 5694008 (+)
G63390 NA non-coding upstream 56277 5659219 ~ 5659439 (+)
G63386 NA non-coding upstream 69919 5644656 ~ 5645797 (+)
G63384 NA non-coding upstream 72639 5642877 ~ 5643077 (+)
G63442 NA non-coding downstream 163945 5881195 ~ 5881600 (+)
G63443 NA non-coding downstream 165518 5882768 ~ 5883651 (+)
G63333 NA non-coding downstream 370989 6088239 ~ 6089177 (+)
CI01000010_06093805_06101291 NA non-coding downstream 382168 6093805 ~ 6101358 (+)
CI01000010_06102935_06103344 DEDD non-coding downstream 385607 6102857 ~ 6103603 (+)
CI01000010_04640858_04683752 OSBPL9 other upstream 1061723 4640516 ~ 4683778 (+)
G62983 NA other upstream 1266389 4448172 ~ 4449327 (+)
G62856 NA other upstream 1775771 3937757 ~ 3939945 (+)
G62838 NA other upstream 1821923 3890095 ~ 3893793 (+)
G63524 NA other downstream 657308 6374558 ~ 6374667 (+)
G63572 NA other downstream 868678 6585928 ~ 6617806 (+)
G65803 NA other downstream 3315297 9032547 ~ 9038005 (+)
G65875 NA other downstream 3410060 9127310 ~ 9132112 (+)

Expression


Co-expression Network