Fish Transcriptome and Expression Database

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model fish

XLOC_008927 (AL954387.2)

Basic Information

Item	Value
gene id	XLOC_008927
gene name	AL954387.2
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007126.7
NCBI id	CM002899.2
chromosome length	48040578
location	2265969 ~ 2266083 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017639
tccggcagctagctctctgcaactctcacatggtcacctactaaagctaagcagggctgtgcctggtcagtacctggatgggagaccacatgagaaagctgGGTTGCTGATAGGG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000112608

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00017639	True	115	rRNA	0.55	1	2265969	2266083

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_008926	shox2	coding	downstream	77547	2182103 ~ 2188422 (-)
XLOC_008925	taar12m	coding	downstream	213710	2051128 ~ 2052259 (-)
XLOC_008924	dock10	coding	downstream	255043	1897375 ~ 2010926 (-)
XLOC_008923	porb	coding	downstream	380722	1847135 ~ 1885247 (-)
XLOC_008922	taf15	coding	downstream	421921	1825172 ~ 1844048 (-)
XLOC_008928	NA	coding	upstream	57583	2323666 ~ 2328284 (-)
XLOC_008929	neu4	coding	upstream	224121	2490204 ~ 2497568 (-)
XLOC_008930	srprb	coding	upstream	244678	2510761 ~ 2519640 (-)
XLOC_008931	dnajc30b	coding	upstream	323866	2589949 ~ 2596125 (-)
XLOC_008932	NA	coding	upstream	332721	2598804 ~ 2611170 (-)
XLOC_008910	LO017713.1	non-coding	downstream	944063	1321790 ~ 1321906 (-)
XLOC_008908	NA	non-coding	downstream	1122900	1140445 ~ 1143069 (-)
XLOC_008903	NA	non-coding	downstream	1257610	1007600 ~ 1008359 (-)
XLOC_008902	NA	non-coding	downstream	1272382	986144 ~ 993587 (-)
XLOC_008899	NA	non-coding	downstream	1365090	899089 ~ 900879 (-)
XLOC_008933	NA	non-coding	upstream	352196	2618279 ~ 2625928 (-)
XLOC_008940	CABZ01086049.1	non-coding	upstream	470300	2736383 ~ 2736498 (-)
XLOC_008942	NA	non-coding	upstream	547433	2813516 ~ 2816142 (-)
XLOC_008898	NA	non-coding	downstream	1357662	877204 ~ 908307 (-)

Expression

Co-expression Network