XLOC_008943 (CABZ01086041.1)


Basic Information

Item Value
gene id XLOC_008943
gene name CABZ01086041.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2820768 ~ 2841677 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017658
ATGCACGGTTCTGAGGAGAGTGTGCCTGGAACCGTGCTTCAGAGGCTTATGCAAGAACATCTGCGATACACAACGAGTGGAAATGGTGGAGGGGTAGAAAACATTTCTCAGGTGCCAAGCAGCCCCACATCCACAGAGAACCCATTCCTGCAAAAAGAGGGTCAAGTAGCATATTCATATCAGCTTTTGCCCTTACACTTTCAGTCGCGACAGGAACCACAAGGTCAGGAGCATCAAGTAGACAGCAGTACCATGGAAAAGACTGTTGGTGTTGGTGCATGTAGAGCAGACCAAGCTTTGCCTGAGATCGACCTGTTGGAGCCTCCATCCTATGTGGAGGCTAAAATCCAATCTCAACAGATTAAAGGACAGCAAAGTCTGATGGATCCTCTGTGTCAAACCCACAACTACCAGAGTCTTCAAGATCGAGAAAACCTTTCAAATAATCCACAACAAACTCCAAATCTGGTCTTTTATAAGGAAACCCCTAAAAACCTTGTCCACCAAAGTCAGCAGCAACACAACCAGCCTTCGGCGATGTCTGAAAGTCCGACAGGCTCACATTCCCATCTGCCATCACTTTCTAACCCGTGTTCAATCTCCTCCCCTGCTCCACTTTCATCCTCATCCACGTCTCTCTCAACGGTTCCCACGAAGAACCTCGTGGAAGGTCAAACATGGGTTCAACAAGGATTCAATGATGATGCATCTCTCTGGGAGGAAGGTGTGTTAGATTTGAACCAGGGTCACGTTCACTCACCGAGCGAAAGAATCATGCAACTCAGGCTAGAATACAGTGGTGCTAAGCAAAGCATCGGACCTTTCAGTTCACCTTGCACAGGAGACACTGTTCATTTTGGGGCTGATAATACAGCAGATTCCCTTTCGTCAGCTAGTAAGACCTCAAATAGTAACCAACAACTTCCACCGCCACCCTCGTCACTGTGGACTCTGGATCAAAGAGGTCCTCCCCCAGAATATCCCTTCAAGTTTAAGTTACAGACTGCGCTTTCGCCCATGTTACACTCAAACTCTTCATCTCCGGAACAGGCACAAATCTTCAGTGATACTTTGACAGCAGCCGTGATGGAGACAGCACCACAGAGAGGAATAGAAAGACACAATCCTTCAACTTCACATCTCCAGACACAGACCGGCCCCGTGACCTCACAGGCTTCTCAGCAAAATTATCAGGCTGTATCTCTGTCTCAGTCACTGGCATTTCCTCCACCTCAGACTGGATTCGTGACTCAAGGACTGTCGACTTGTGTGGCCCCTTTTAGGCAGCCTTTCCAAGGGGAAACGTTTGCTATTGTCAGCCATGCCAAGCCGATCCTGGAGAGCTTGAAAGAAGAGAACCAAAACCTTAAACTAGAACTTCACAAGCAAAACGAGAAGGCCAGCAAACTACAGCAGTTGGAGATCGAGGTTGCACGACTGTCCGAGGCACATGAGAGTTTAGTCAAGAGCTCATCCAAACGCGAGTGTTTGGAAAAAAACATGAGGAACAAACTGGAGGCGGAGATCAGGCGTCTTCATGATTTTAACAGAGACTTAAGAGGAAGAGAAAGCCAGAAAGACCTAGAAACATTACAGATAGAGGCAGCGAATCTCCGAACAATGAATGAAGATCAGAGACGGCACATTGAGATCTTAGAGCAAGCTTTGAATAATGCTCAGAGTAAAGTCATCAAGCTGGAGGAAGAGTTGAGTAAAAAGCAGAAGTATGTGGAGCGGGTAGAACGGTTGCAGCAGGCACTAGCACAGCTCCAGGTCGCATGTGAAAAACGCGAACAGCTCGAACAACGTCTACGTATTCGCCTGGAACGAGAAGTGGATTCACTGCGAACACAACAGCGTGCTGGTATATCGGTTTCCCGCACCGCAGGTGAGTCCACAGCTCCTGCTGTACTGGATTTGCTAAGGGAGAGAGAAGAAAGGATTCTGGGATTGGAGGCTGATATGACACGTTGGGAGCAAAAGTACTTAGAAGAAAGCGCAATGAGACACTTTGCCATGGAAGCCGCAGCGACAGCCGCAGCACAGAGaGATACAACTATAATCCAGCATTCTCGCAGTGGCAGTTACAGTGACAGCTCTCTGTGGCTGCATGAGGAGGAGAACAGAATTCACAGCGCTCGTCAATCTCAGGAAATGGAGCAAAGGATAAAGGACTTGCATGCTCAGTTGCTGGAGAAAGATGCCATGATTAAAGTCCTACAACAGCGTTCTCGTCGAGATCCTGCTCCTCTGCGTCCTGCCCGTTCTGTGCCCTCCATTTCTGCAGCGACTGGACTGCATGCACGGCAGAAGTCTCAGACTGATCCCAGAGACACGCACAGTTGGAAAGGCAGTACAAATGTACTCCTGAGAAAAAGTCAAGTAGACCACATCCTTCCCTCTTTGCCCCCTCTTTCAGATTCTGTCTCTTCATCTCTCCCTGCCCCCTCACTTTCCTTTCTTCCTCCATCTTTCTCCTCCTCTCTACCTTCCTCTTTTCCTCCCTTCTCGTCCTCTGCATGTTCGAACGCGTCATTATTATCCTTACCCAACTGTGTTCCCAACTCCAGCGCTTCCCGTCTTCCTACCTCTGCCTCTTCCACATTACTGTCGTCTTCATCTATTTCTCTTCTGCCTCCTTTATCACTCTCTCTGCCCTCCACTCCTCTTCTATCTGCTCATTCCAAATCAGCCAGCAAAGACAGTAGCAGTCAAACAGGACAAAGTATGAAGACATCAAGTACTGCTAGCTCCACAGCACAAAAAAAGAGAGAATCTCCATCCAGCCAATCTAAAGGCCTGGAGGGTCGAGCACAGCTGACTGCAGGACAGAAGATGCCCTTGCTTGATCTAGATCTTGTGGAGATCCTTATCTGA
>TCONS_00017657
ATGCACGGTTCTGAGGAGAGTGTGCCTGGAACCGTGCTTCAGAGGCTTATGCAAGAACATCTGCGATACACAACGAGTGGAAATGGTGGAGGGGTAGAAAACATTTCTCAGGTGCCAAGCAGCCCCACATCCACAGAGAACCCATTCCTGCAAAAAGAGGGTCAAGTAGCATATTCATATCAGCTTTTGCCCTTACACTTTCAGTCGCGACAGGAACCACAAGGTCAGGAGCATCAAGTAGACAGCAGTACCATGGAAAAGACTGTTGGTGTTGGTGCATGTAGAGCAGACCAAGCTTTGCCTGAGATCGACCTGTTGGAGCCTCCATCCTATGTGGAGGCTAAAATCCAATCTCAACAGATTAAAGGACAGCAAAGTCTGATGGATCCTCTGTGTCAAACCCACAACTACCAGAGTCTTCAAGATCGAGAAAACCTTTCAAATAATCCACAACAAACTCCAAATCTGGTCTTTTATAAGGAAACCCCTAAAAACCTTGTCCACCAAAGTCAGCAGCAACACAACCAGCCTTCGGCGATGTCTGAAAGTCCGACAGGCTCACATTCCCATCTGCCATCACTTTCTAACCCGTGTTCAATCTCCTCCCCTGCTCCACTTTCATCCTCATCCACGTCTCTCTCAACGGTTCCCACGAAGAACCTCGTGGAAGGTCAAACATGGGTTCAACAAGGATTCAATGATGATGCATCTCTCTGGGAGGAAGGTGTGTTAGATTTGAACCAGGGTCACGTTCACTCACCGAGCGAAAGAATCATGCAACTCAGGCTAGAATACAGTGGTGCTAAGCAAAGCATCGGACCTTTCAGTTCACCTTGCACAGGAGACACTGTTCATTTTGGGGCTGATAATACAGCAGATTCCCTTTCGTCAGCTAGTAAGACCTCAAATAGTAACCAACAACTTCCACCGCCACCCTCGTCACTGTGGACTCTGGATCAAAGAGGTCCTCCCCCAGAATATCCCTTCAAGTTTAAGTTACAGACTGCGCTTTCGCCCATGTTACACTCAAACTCTTCATCTCCGGAACAGGCACAAATCTTCAGTGATACTTTGACAGCAGCCGTGATGGAGACAGCACCACAGAGAGGAATAGAAAGACACAATCCTTCAACTTCACATCTCCAGACACAGACCGGCCCCGTGACCTCACAGGCTTCTCAGCAAAATTATCAGGCTGTATCTCTGTCTCAGTCACTGGCATTTCCTCCACCTCAGACTGGATTCGTGACTCAAGGACTGTCGACTTGTGTGGCCCCTTTTAGGCAGCCTTTCCAAGGGGAAACGTTTGCTATTGTCAGCCATGCCAAGCCGATCCTGGAGAGCTTGAAAGAAGAGAACCAAAACCTTAAACTAGAACTTCACAAGCAAAACGAGAAGGCCAGCAAACTACAGCAGTTGGAGATCGAGGTTGCACGACTGTCCGAGGCACATGAGAGTTTAGTCAAGAGCTCATCCAAACGCGAGTGTTTGGAAAAAAACATGAGGAACAAACTGGAGGCGGAGATCAGGCGTCTTCATGATTTTAACAGAGACTTAAGAGAGCGTTTGGAAACAGCCAGTCGACAGCTGGAAAGTCAGGAGCTCGAGGGACAAGATGATGGACCGTTATATCTTTTACAGAGAAGAGAAAGCCAGAAAGACCTAGAAACATTACAGATAGAGGCAGCGAATCTCCGAACAATGAATGAAGATCAGAGACGGCACATTGAGATCTTAGAGCAAGCTTTGAATAATGCTCAGAGTAAAGTCATCAAGCTGGAGGAAGAGTTGAGTAAAAAGCAGAAGTATGTGGAGCGGGTAGAACGGTTGCAGCAGGCACTAGCACAGCTCCAGGTCGCATGTGAAAAACGCGAACAGCTCGAACAACGTCTACGTATTCGCCTGGAACGAGAAGTGGATTCACTGCGAACACAACAGCGTGCTGGTATATCGGTTTCCCGCACCGCAGGTGAGTCCACAGCTCCTGCTGTACTGGATTTGCTAAGGGAGAGAGAAGAAAGGATTCTGGGATTGGAGGCTGATATGACACGTTGGGAGCAAAAGTACTTAGAAGAAAGCGCAATGAGACACTTTGCCATGGAAGCCGCAGCGACAGCCGCAGCACAGAGaGATACAACTATAATCCAGCATTCTCGCAGTGGCAGTTACAGTGACAGCTCTCTGTGGCTGCATGAGGAGGAGAACAGAATTCACAGCGCTCGTCAATCTCAGGAAATGGAGCAAAGGATAAAGGACTTGCATGCTCAGTTGCTGGAGAAAGATGCCATGATTAAAGTCCTACAACAGCGTTCTCGTCGAGATCCTGCTCCTCTGCGTCCTGCCCGTTCTGTGCCCTCCATTTCTGCAGCGACTGGACTGCATGCACGGCAGAAGTCTCAGACTGATCCCAGAGACACGCACAGTTGGAAAGGCAGTACAAATGTACTCCTGAGAAAAAGTCAAGTAGACCACATCCTTCCCTCTTTGCCCCCTCTTTCAGATTCTGTCTCTTCATCTCTCCCTGCCCCCTCACTTTCCTTTCTTCCTCCATCTTTCTCCTCCTCTCTACCTTCCTCTTTTCCTCCCTTCTCGTCCTCTGCATGTTCGAACGCGTCATTATTATCCTTACCCAACTGTGTTCCCAACTCCAGCGCTTCCCGTCTTCCTACCTCTGCCTCTTCCACATTACTGTCGTCTTCATCTATTTCTCTTCTGCCTCCTTTATCACTCTCTCTGCCCTCCACTCCTCTTCTATCTGCTCATTCCAAATCAGCCAGCAAAGACAGTAGCAGTCAAACAGGACAAAGTATGAAGACATCAAGTACTGCTAGCTCCACAGCACAAAAAAAGAGAGAATCTCCATCCAGCCAATCTAAAGGCCTGGAGGGTCGAGCACAGCTGACTGCAGGACAGAAGATGCCCTTGCTTGATCTAGATCTTGTGGAGATCCTTATCTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000019442

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017658 False 2877 mRNA 0.48 10 2820768 2841677
TCONS_00017657 True 2958 mRNA 0.48 11 2820768 2841677

Neighbor

gene id symbol gene type direction distance location
XLOC_008942 NA coding downstream 4626 2813516 ~ 2816142 (-)
XLOC_008941 tgfb1a coding downstream 17455 2776506 ~ 2803313 (-)
XLOC_008939 ppp5c coding downstream 66712 2727670 ~ 2754056 (-)
XLOC_008940 CABZ01086049.1 coding downstream 84270 2736383 ~ 2736498 (-)
XLOC_008938 si:ch211-235m3.5 coding downstream 94106 2700646 ~ 2726662 (-)
XLOC_008944 ankrd49 coding upstream 9288 2850965 ~ 2857961 (-)
XLOC_008945 guca1c coding upstream 43034 2884711 ~ 2903475 (-)
XLOC_008946 CABZ01086029.1 coding upstream 76580 2918257 ~ 2931021 (-)
XLOC_008947 zgc:153184 coding upstream 90205 2931882 ~ 2973368 (-)
XLOC_008948 mlnr coding upstream 134443 2976120 ~ 2985599 (-)
XLOC_008933 NA non-coding downstream 194840 2618279 ~ 2625928 (-)
XLOC_008932 NA non-coding downstream 209598 2598804 ~ 2611170 (-)
XLOC_008928 NA non-coding downstream 492484 2323666 ~ 2328284 (-)
XLOC_008951 NA non-coding upstream 273660 3115337 ~ 3116262 (-)
XLOC_008952 NA non-coding upstream 318761 3160438 ~ 3162459 (-)
XLOC_008957 NA non-coding upstream 912889 3754566 ~ 3760957 (-)
XLOC_008970 NA non-coding upstream 1321901 4163578 ~ 4174873 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000363_00250180_00272499 AMOTL1 coding CI01000363 null 250180 ~ 272742 (+)