XLOC_008965 (CR626884.5)


Basic Information

Item Value
gene id XLOC_008965
gene name CR626884.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 4049222 ~ 4053149 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017685
ATGGACCAGAACGCAACCAATTCAACCGAAGAACACTGTGGCTTGTCTGAAATGCCAGCTCGTCTATTTTTCATAACTGTATACACAGTCATTTTTGTGGCCAGCCTAATGCTCAACAGCATTGccatttatgtgtatttttttaaagttacaactCAGTCCAGCATCACAGTGTATCTGAAGAATCTGGCAATAGCGGATTTGTTTGTCTGCCTGTGTCTGATATTACGCATTGTTAAGTATGCTAGACCTTCTGTGGGAATTCAAAATATCTACTGTCATTTTGGATCGCCAGCTTCTTACCTCAACATGTACTCCAGTATTCTCTTCATGGGCTACATTGCTGCAAACAGATATATGAGAATTGTGCGGCCACAGGAGACTCACTGGTTCCAAACGGTCCGCTCGACCCGATACATCTGCGCTGTGACCTGGGCTACCTTGCTGGGATTTATTTTGGTCTACATTGCTGCTTTTACCATTACTGATAAAGAACACCCTGCCGACAGTGGTTATGTCTGTGAAAGCTTTCATAACAACTTGGTCAAACAGATCCACCTGGTCCTGCAGATCACTTGCTTTTTAGGCTTTTTGTGTGTGCTGGTGTCCCTCATTCTGTTTTATTGGTGGAACGTACAAAAGCTTCAGCAAGCTCAACACACTATGCCGAAACAGCCTGGTAACAATAAGCTCAGCAAGTCCAAACGTAACATGCAAGTTCTGGTGGTCATTTTCTGTGTGTGCTTTGTGCCTTATCACCTGATAAGACTGCCATATGTGTTGCTCAATCCCCTGCTGCATGACTGCACCACAGCTCAGGTTTTCCGCATCCTAAAAGAGCTGACTGTCCTGCTTGCAGTACTAAACGCCTCTTTGGATCCGATAATTTACTTTGCATTTTGCAAGACTTTCAGGGGCCATCTTAACCTCCAAAGATTTTGCAGATCAGAATGAAAACTGATATTTCTGCACCATCAGTGGTCAAAAAGCCTTGCTCTGCGAATGCAGAATGCTACCTAATGTAATGATTTTGAGTAAAGACTCTGCATGTCATTTTCAATACTAGAGGGAGCATATATACctgattaacaaaataaatattgataGCATTGTGACTATaactgtgtcccaaatggcacactacacACTCAACACACTCgtttatgtatgtagtgtcgccccaaatggaacactaacattttatttactgagcggaaattcaaactgtttccctgatgacgtttgccaaattagtgaaataaatgaccaaactactaTAATACCTTTAATGAGTAGAATCGCATTCACCATTGGAAGGCGGTGCACTTATGTAGGAGAATCACACATGTGCTTCGTCTCTTCCGCTTCGTGAGCAAAGCTGTgactgttgagtgtgtgaagtgtccgaCATTCCACACTTtgttttagcggctgaatgagtgcatcatccaggtatttaaagtgcacttattatttagagttttcagtgtgaatgcactacttccactatttatactacaaaatggcgtagaatagtgcataagtatgtgatttgggatgcactttgagtgtggaatcatggaagTGCATgcacagttgaaatcaaaattattagcccttctgtgtttttctattttctttttcagatattttctaagtgaagtttatttataaactaatttcgagaggaacacATGCTTATGATTGGTTGCAGCCAGCCcagcattattcatttattattcaccaatcagaccTAGAGTGAAAACACATGCTAGTTCGGGCGGACAGCAAGGTTGCTGTTGCGTACATCAACCATATGTGGGTTATGAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000116123

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017685 True 1830 mRNA 0.41 2 4049222 4053149

Neighbor

gene id symbol gene type direction distance location
XLOC_008964 P2RY14 coding downstream 11596 4036709 ~ 4037626 (-)
XLOC_008963 CR626884.6 coding downstream 21855 4018362 ~ 4027367 (-)
XLOC_008962 CR626884.4 coding downstream 38209 4009572 ~ 4011013 (-)
XLOC_008961 si:ch73-309g22.1 coding downstream 73187 3970797 ~ 3976035 (-)
XLOC_008960 gpr171 coding downstream 85573 3957876 ~ 3963649 (-)
XLOC_008966 CR626884.2 coding upstream 8851 4062000 ~ 4067158 (-)
XLOC_008967 si:dkey-83h2.3 coding upstream 32474 4085623 ~ 4094888 (-)
XLOC_008968 rnf168 coding upstream 48105 4101254 ~ 4124099 (-)
XLOC_008969 ANO7 coding upstream 75411 4128560 ~ 4152582 (-)
XLOC_008970 NA coding upstream 110429 4163578 ~ 4174873 (-)
XLOC_008957 NA non-coding downstream 288265 3754566 ~ 3760957 (-)
XLOC_008952 NA non-coding downstream 886763 3160438 ~ 3162459 (-)
XLOC_008951 NA non-coding downstream 932960 3115337 ~ 3116262 (-)
XLOC_008946 CABZ01086029.1 non-coding downstream 1118201 2918257 ~ 2931021 (-)
XLOC_008942 NA non-coding downstream 1233080 2813516 ~ 2816142 (-)
XLOC_008973 CU467614.1 non-coding upstream 312009 4365158 ~ 4365272 (-)
XLOC_008997 FO704791.1 non-coding upstream 1329913 5383062 ~ 5383180 (-)
XLOC_009008 NA non-coding upstream 1845261 5898410 ~ 5901982 (-)
XLOC_009014 NA non-coding upstream 2915232 6968381 ~ 6976921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000092_01270604_01273133 NA coding CI01000092 null 1269745 ~ 1273133 (-)