XLOC_009006 (rbp2a)


Basic Information

Item Value
gene id XLOC_009006
gene name rbp2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5803458 ~ 5815006 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017754
AAAGAACTCTGTCCTTACGGGTCAtttgatctcacacacacacagctataaAAGGCCACGGTTCACCTCATCCTACTCTTCTGAAATATACAAACCAGCACATCCAGCTTCACAATGCCAGCCGATTTCAACGGCACGTGGGAGATGCTCAGCAATGACAACTTTGAAGATGTCATGAAGGCTTTGGACATCGACTTCGCCACCCGTAAGATCGCAGTGCATCTCAAACAGACGAAGGTCATTGTGCAGAACGGGGACAAATTTGAGACCAAAACTCTCAGCACCTTCAGAAACTATGAGGTCAATTTCGTCATTGGAGAGGAGTTTGACGAGCAGACAAAAGGCCTGGACAACAGAACTGTTAAGaccCTGGTAAAGTGGGATGGAGATAAACTGGTGTGTGTGCAAAAGGGAGAAAAGGAGAACCGTGGCTGGAAGCAGTGGATTGAAGGAGACTTGCTTCACTTGGAGATTCATTGTCAAGACAAAGTCTGCCATCAAGTCTTCAAGAAGAAAAACTAATGCTCCAAAAAGGCAGCTGGTTTTTCACTCCTGGGTTTAATGTTGTGCTGTGTGTATTTATTAAAGCAATTTTAATAAACAGCCAAAAACTTTCATTCGGTGGTCAGCATGAGAATTTCAATGCAGCAAATAAAAGTCCTCAATCAA

Function

symbol description
rbp2a Predicted to enable lipid binding activity. Is expressed in gut; liver; retina; and yolk syncytial layer. Orthologous to human RBP2 (retinol binding protein 2).

GO:

id name namespace
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020320-2 Predicted to enable lipid binding activity. Is expressed in gut; liver; retina; and yolk syncytial layer. Orthologous to human RBP2 (retinol binding protein 2).

Ensembl:

ensembl_id ENSDARG00000070038

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017754 True 669 mRNA 0.44 4 5803458 5815006

Neighbor

gene id symbol gene type direction distance location
XLOC_009005 hnrnpl2 coding downstream 4275 5784212 ~ 5799183 (-)
XLOC_009004 chchd2 coding downstream 22810 5773119 ~ 5780648 (-)
XLOC_009003 phkg1a coding downstream 60927 5722525 ~ 5742531 (-)
XLOC_009002 urb1 coding downstream 82792 5627877 ~ 5720666 (-)
XLOC_009001 wdr62 coding downstream 179002 5565641 ~ 5624456 (-)
XLOC_009007 brwd1 coding upstream 13988 5828994 ~ 5895124 (-)
XLOC_009008 NA coding upstream 83404 5898410 ~ 5901982 (-)
XLOC_009009 dscamb coding upstream 323417 6138423 ~ 6404443 (-)
XLOC_009010 atm coding upstream 699958 6514964 ~ 6650993 (-)
XLOC_009011 meis3 coding upstream 1023033 6838039 ~ 6863317 (-)
XLOC_008997 FO704791.1 non-coding downstream 420278 5383062 ~ 5383180 (-)
XLOC_008973 CU467614.1 non-coding downstream 1438186 4365158 ~ 4365272 (-)
XLOC_008970 NA non-coding downstream 1628585 4163578 ~ 4174873 (-)
XLOC_008957 NA non-coding downstream 2042501 3754566 ~ 3760957 (-)
XLOC_008952 NA non-coding downstream 2640999 3160438 ~ 3162459 (-)
XLOC_009014 NA non-coding upstream 1153375 6968381 ~ 6976921 (-)
XLOC_009015 CR396585.2 non-coding upstream 1193816 7008822 ~ 7008938 (-)
XLOC_009016 CR396585.1 non-coding upstream 1217091 7032097 ~ 7034722 (-)
XLOC_009017 NA non-coding upstream 1249462 7064468 ~ 7065313 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000092_02902889_02909457 RET2, RBP2, RBP2A coding CI01000092 null 2902812 ~ 2909489 (-)