CI01000036_01611248_01620780 (ZNF804A)


Basic Information

Item Value
gene id CI01000036_01611248_01620780
gene name ZNF804A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000036
NCBI id null
chromosome length 2115676
location 1611119 ~ 1621389 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000036_01611248_01620780.mRNA
AGGTGCTCACAGAAGGACTTTCCTAGAAGAAGTAACCATTTCCTGATATAGAGCAAACGATTTTGGTCTAACCTTTCAGTGCTACTGAGTTAAAGAAAATAAGGGTCACTTTCCCTAGCACATCCAGCTAATCAAGCGATTCAGTTCTCATTACCTGTAAGCTAGCCACTTATTAAGTACAATTACACGGCAATTGTTTCATGCTGTCTCACAGTGGGAGTGAGTGAGAGGGATGTTATTATTTTTGCATATCACAGACGTGTGTTTAGCGGTAGCGTATTCTCACCTAAGATGAGTGAGAGACAGACTATTTTCACAAGGCATCAGATCATTTGAATGGGCCGGGGTTCCCTGTTTCTCAGTCTGATGGGTTTGATGCGGTTGTGAAAAGCTCACGATCATGTCAGTAATAACAGCAGACATATGTTTGTCAGCTTTGACAATCATATATCATTTACTGGCCATCTCATTCTGGTTGACAAGTTTGATAGTTGACTTAATCATCCTTGGCTGATTTACTAGTCATTCTCTGCATGCTGTTTTTCACAGTAATGACAGGCTCACATTTGACTCTACAATGAGTTTTATGGTATACTGATTCCAATTAAAATGGAAGTGCTTTTCCTCTTCCCTGTGGTCATTTGGATTGGAGACCTTTTGGGAATAGATCTTAGATCTGATTATGCTGAGACGGGGAAAACCTTGGCCAAAGCCCTGGAGGACCTCAAGGCCAACTTCTACTGTGAGCTGTGTGACAAACAGTATTACAAGCATCAAGAGTTTGACAACCACATCAACTCGTATGACCACGCTCACAAGCAGAGGCTGAAGGAACTGAAGCAGAGAGAGTTTGCCCGCAACGTGGCCTCCAAATCCAGGAAGGATGAGAGGAAACAGGAGAGAGCTCTCAGACGCCTACACGAGCTTGCTGAACAACGCAGAGAGGTGCAATGTGCCCCAGGAAGTGGTCCTATGTTTAAGTCTACTACGGTGGCAGTGGAGGGTTCTTTCAGGGAGTCCTGCTGTGATGATGCCCAAGAAGAGAACCACAGCTGTGCGGCTCAAGATTCAGGGGGTCAGATCCATTCCAGCAGTTGTGGCTTAGCTAGTAAGCAGTCACCATGGTCATACAATGGGAGGGCCAAAAAGCAAACTTTCAGACGCAAAATTGCATTCTCTTTTTCCTTTCCAAAGAAAGCATCTATTAAGCTTGAGTCATCAGCGGCGGTATTCTGTGAGAGTATGGAGGAGGGATCGATGGAGCGGAGCCGCAGACAAAGACTCAGAGCACCCCCTGTCGAGCTTGACCTCCCCGGCTCCCCCATTGAGGAAAAAGGACTAAATTGTGAGGAGGCAATTTACAGCACTGGCACACAGCAGGGCAAGCACTTCCAAGAAAGTGACAGCACCGGAAGTCAGGGGTCATCAGATATGCCTGTGGCGAGGGAGAGCCCCTCGTCAACGGCCTCAGATTTGTGTGCTTTGCTCGTTTACTCAGAGGATGTGCCCAGTCCCGCCGTCTCCCTCATAAACACTTCCCCCTTTCGTTTAAACAGTGCTGATATTGTTCTTGACTCTGAGGACTCTGTTGAGAGCCTGAAAAGCAGCATTGCTGAAAGTAAACCTGAGACCTCTGAGGATGTGACACTAGAGGACAACAGCATTTCAGAGGAGGGGCACTCAACCATCACTGAACCTCCGGAAAAGACTTTCTCAGATGTGTCACCTAAGAATGACTCTGCTCAAAAACAAACACAAGCGGAGGATGCAACTTCAAAGACATCTTACTCTTTCATAAAACCCAGCCAGCCTTTTTTCTCTGTCCTAAGCAGAGATGGTAACACCATCTTCCAGTGGCCCTCCGAGATGGTGACCTTTACAAGGACAGAGCCATCCCTGTCTTTCAGTTGCAACCCCCTCCATTTTGATTTTAAGAGGTCACGGATTAGAAGGTCTGCTGACACTCAGGAGATGACTGAGCCCAAAACTGATGAGGAATTATCTGTCTGCTCAGGTTTCAAATCCTGCCACTCTGACAAGCACATTGAGGAATCCACAGCCAGCCTTAGAAACAGTCCCAGCCAAGGACCTGAAGGCAAGGTCAGAAAGTGTTATCAGTATTCAAGTGACACAGAGAGTTGTGTCAGGCTGAAAACACATGACAGGTGTAGACATTCAAAAGATTGGATTCATGCAAGTAAGAGGGCGGAAAAGAAATTGCGGACCAGGGATCGACGTCATTACAGGAGCCACTGCAAAAGGAAGCGAAGAAGACGGAAGAGGAGGAGAGACAGATACCGGGAAACAGAAAGCAATATGGTGAAATCTAAGAAATTCCACAGACGACCTGAGTGTGTGGAAGGACTTGATAGCCAATTTAGCAGCACCACTTCACAGCAAGTGCATCCATTAGAGAAGTCAAAGCAATCAGCTCAAAATCAGGCTGAGGACAGCAGCACAGCTCCCGTAGTTGAGGAAGGGTTGGGAGGCAGGAGGCAGGAGGCAGCAGCCGATGTAAACGGCTCAGCGGGCTGCACCATTCTCTCTGATGAGTTCTGTGCTGATGGTGAAAAGGTGCTTAGAAACAGCAGGGAAAAGCCTGACAATCCAACTGCAGGGGAGCTAACGACCATAGGACAGTGTTCTCGCAGCCAGGACACATCTCACTCTCAGAGATCCAGTGCAGCTGAAGGGTGCCGAGAGGAGACACCTTCATCACCAGAGACCAACAGAGATGGACCGTGTGAAGGACAAAGTTCGAAAAGACGACGAACAGATTCTCTAAGTGATGGAGATGAGTCTTATGACCCCTGTCAGTCGCCGGCAGAGATTTCTGATGGGTGCACAGAACTTACCTGTTGTGAGCAAGGGATTGGGAGAAAAAGGAAGAGGCGGTCACATGTCCAAGATCAAACCCCATGTCTTGCAAATGAATGTCCTGTTGTTAAAAACAGTGTTCTGGAAGAACAGGACAAGGCTGTGGAGGAGTCAAGCATGAAATGCCTTGTTTTAAAAGGCGTGTGTGACAGCTCGAATGGGTCAGACCAAATCTCATGCAGTATTGATGATGTAGAGAGCAGTGCGGTTGATCCTCAGACATTTACTTCCATTAGCAGTGCCCTGGGTCATACTGTGGTGGAGAGCAGTGACTGGCAACGGAGCTCCTCCTCTGAGATCAATGCTTCATGCACCAAGGACAGTCTAACTCTACTGGAGACAGATTCAAAGCTCTCGAAAGAGCCGACAAAGGAGAGTAGTAACATCCTCAGCAGCGAGTCTAAAGCAGCACAAACCCCCTTAAAGAACTGTAACAAGTATTCAGCGGCTGCTCAGGCCTGCCTGCTCGATGTGAGAGAGTTAGCCCTGCAGAGGACTGAAAAAGCCACTCACGACAAATCATGTCAGCACAGCATTCAAACCCCACCGCAGAGATTTCACCTAGGCATTCAGGCTGAGGAGAAGTTGAGCAGGGAGTGCTTCCACACCACCAGCAACCTGTTCCAACCCTCTGCATCTTTTCAGGCCCCCTCAGAAAGCATGGAGAGACACTGTCTCCTGCAGATCCAGAGCCATGGACAGGTGCTACACCAGCAGGTGTTCCCCACCAAGCTCAAATCTGTCCTATCCAGGCCACATCTGCCCATGTCATCTGCTGTTCTCCATCCAGTTCACCTGCCATCCTCCTTGCCTTCTGGCTCCATCACAATACGTCACACCATTCTACAGCACCACAGTGCTTTTCTGCCCCCGCAACCCCCTATCTACCCCCAGGCTAGCGGAATGCAGCAAAATAGCGCTATGCACCATGTGCTACGACAGCATCATGTTGAACACATACATAATGCTCATTTTTATGAGTAGTTTTTATGCAAATCAAAAAGCCCATAGCATGTAATGGGGAAACTGAATGTGACTCGAAAGCTAAACTGATATGGGCAAATTATATTTCTTACTTTGCTAATTACGGTCAACCTCAGTGCAGTGAATAAA

Function

symbol description
znf804a Predicted to enable metal ion binding activity. Predicted to be active in nucleus. Orthologous to human ZNF804A (zinc finger protein 804A).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000036_01611248_01620780.mRNA True 3990 mRNA 0.48 5 1611119 1621389

Neighbor

gene id symbol gene type direction distance location
CI01000036_01475403_01476425 NA coding downstream 134428 1475403 ~ 1476691 (-)
CI01000036_01466321_01474630 NA coding downstream 136489 1465479 ~ 1474630 (-)
CI01000036_01428324_01454913 ITGAV coding downstream 155334 1428287 ~ 1455785 (-)
CI01000036_01417031_01422737 UMPS coding downstream 188382 1416887 ~ 1422737 (-)
CI01000036_01406109_01409167 CRYBA2B, CRYBA2, CRYBA2A coding downstream 201653 1406051 ~ 1409466 (-)
CI01000036_01763171_01765280 NA coding upstream 141086 1762475 ~ 1765385 (-)
CI01000036_01782319_01786637 NUP35 coding upstream 160572 1781961 ~ 1786637 (-)
CI01000036_01839255_01848818 CUNH3ORF70 coding upstream 215760 1837149 ~ 1848818 (-)
CI01000036_01850532_01860056 EHHADH coding upstream 229072 1850461 ~ 1860056 (-)
CI01000036_02022324_02026053 NA coding upstream 400558 2021947 ~ 2031983 (-)
G174357 NA non-coding downstream 8234 1602531 ~ 1602885 (-)
G174121 NA non-coding downstream 55500 1555342 ~ 1555619 (-)
G174102 NA non-coding downstream 93699 1517051 ~ 1517420 (-)
G174100 NA non-coding downstream 94962 1515908 ~ 1516157 (-)
G174092 NA non-coding downstream 107475 1503291 ~ 1503644 (-)
G174318 NA non-coding upstream 6770 1628159 ~ 1640138 (-)
G174319 NA non-coding upstream 32597 1653986 ~ 1663487 (-)
G174320 NA non-coding upstream 42813 1664202 ~ 1666700 (-)
G174363 NA non-coding upstream 55199 1676588 ~ 1676958 (-)
G174365 NA non-coding upstream 88484 1709873 ~ 1710209 (-)
G174002 NA other downstream 335924 1274778 ~ 1275195 (-)
G173528 NA other downstream 650742 959421 ~ 960377 (-)
G174386 NA other upstream 243545 1864934 ~ 2010840 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037676 znf804a coding NC_007120.7 CM002893.2 11906770 ~ 12034444 (-)