XLOC_009088 (rab34a)


Basic Information

Item Value
gene id XLOC_009088
gene name rab34a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 15459974 ~ 15469096 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017898
ATCTGTACGCAGTTCTCGCCGCTTCCGTTCCGTCTGTCGGAGGATCCTGCAATTCTTTATAAACTTGGGAACTGTACGCGATGGACGAATGCTAAAAGCGCCACATGTTTCCGCTTACCCCGTTTCTTTCCAATTTTACTTCTTTGAAGCTATAAAAACTTCCCTATATCAGCACAAGAGAGCATTCATTTCTCAGAAACGACGTCCTGAGAAGCATCATTATGAGTGTACTGCCCCCTGTACGAAAAGACCGCATAATCGGACAGCTTCCTAAGTGCTTCAACAGAGGCGCTGCTTTGAACACAGAGAATGAATTTCACAGCAAGGTGAAGACGGCCTGTCAGCAGCAGAGGACAGGAACTGTGGGTAGGTTTAAGATCTCCAAGGTTATTGTAGTTGGTGATCTGGCGGTGGGGAAAACCTGTTTAATTAATAGATTTTGTAAAGATGTCTTTGACAAAAATTACAAAGCTACCATTGGTGTGGACTTTGAAATGGAGAGGTTTGAAGTTCTCGGAGTCCCCTTCAGTCTGCAACTATGGGACACTGCAGGACAGGAGAGGTTTAAATGCATTGCCTCAACATACTACAGAGGAGCTCAGGCTGTAATCATTGTGTTTGACCTGACTGATGTGGCTTCACTGGAGCACACCAGACAATGGCTTGAAGACGCTATGAAAGAGAATGATCCTACCAGTGTATTACTGTTCTTAGTGGGAACAAAGAAAGATCTGAGTTCTCCTGCGCAGTATTCACTAATTGAGCAGGACGCAATTAAAATAGCGGATCAGATGAAAGCGGAGTACTGGGCTTTGTCTGCCTTGTCTGGGGAGAATGTGAGAGACTTTTTCTTCAGAGTCGCATCTTTAACCTTTGAGGCCAATGTACTGGCAGAACTGGAGAAAAGTGGATCAAGGCGTATTGGGGAAGTTGTTCaaatcagcAGCAACTCTAATAACCTGTATGCAACGTCCAAGAAGAAACAGAGCAACTGTTGTCAGTAGATACTGACTATATGAAAAGGCAAACATTTGCACCGATGCATAATGGTACCAAAGCAAAACACAATCAAATGTACATATCTATGCATAGGGAGAAGACCGAAAAGTGGGATTTCAAGCAAAGGAGAGCTCTGCAGAGAGCAGTGTGGTTTGTTATTCAGAGGGTGTAACTGAATATCCGCTGGATGAAAGAAAACATTCCTTTGTTGGAAAATTCGAGGTTTGCATTTTTTGTGGCAAAGCAGTTTCTGATTTCTCAAGAGCTCTTTGCACATTTTACTAGTGATTATTTCAGTGTGttcaatcattttttatttaattttcttgctTAGTTTACAGTCAGGAGTGATTTTATACAAGGTACACAAGAGGATCATGCATGAGTTGCACAataagaaatgaacagtgataaTTGTATTGTTCTATATCAAAAGTGCTGTTTATTAAAATGGAAGTTGTATAGGAATTCCTTTATATAGCTTCATCTTGCTGTAAAACTTTATAAGTATTAGGGCTTACATACAGATGGTAGTTTTCTGTGACCAgcaattttattataaataaaatgcttttctttttttaa
>TCONS_00017899
ATGAGTGTACTGCCCCCTGTACGAAAAGACCGCATAATCGGACAGCTTCCTAAGTGCTTCAACAGAGGCGCTGCTTTGAACACAGAGAATGAATTTCACAGCAAGGTGAAGACGGCCTGTCAGCAGCAGAGGACAGGAACTGTGGGTAGGTTTAAGATCTCCAAGGTTATTGTAGTTGGTGATCTGGCGGTGGGGAAAACCTGTTTAATTAATAGATTTTGTAAAGATGTCTTTGACAAAAATTACAAAGCTACCATTGGTGTGGACTTTGAAATGGAGAGGTTTGAAGTTCTCGGAGTCCCCTTCAGTCTGCAACTATGGGACACTGCAGGACAGGAGAGGTTTAAATGCATTGCCTCAACATACTACAGAGGAGCTCAGGCTGTAATCATTGTGTTTGACCTGACTGATGTGGCTTCACTGGAGCACACCAGACAATGGCTTGAAGACGCTATGAAAGAGAATGATCCTACCAGTGTATTACTGTTCTTAGTGGGAACAAAGAAAGATCTGAGTTCTCCTGCGCAGTATTCACTAATTGAGCAGGACGCAATTAAAATAGCGGATCAGATGAAAGCGGAGTACTGGGCTTTGTCTGCCTTGTCTGGGGAGAATGTGAGAGACTTTTTCTTCAGAGTCGCATCTTTAACCTTTGAGGCCAATGTACTGGCAGAACTGGAGAAAAGTGGATCAAGGCGTATTGGGGAAGTTGTTCaaatcagcAGCAACTCTAATAACCTGTATGCAACGTCCAAGAAGAAACAGAGCAACTGTTGTCAGTAGAT
>TCONS_00017900
GCCGCTTCCGTTCCGTCTGTCGGAGGATCCTGCAATTCTTTATAAACTTGGGAACTGTACGCGATGGACGAATGCTAAAAGCGCCACATGTTTCCGCTTACCCCGTTTCTTTCCAATTTTACTTCTTTGAAGCTATAAAAACTTCCCTATATCAGCACAAGAGAGCATTCATTTCTCAGAAACGACGTCCTGAGAAGCATCATTATGAGTGTACTGCCCCCTGTACGAAAAGACCGCATAATCGGACAGCTTCCTAAGTGCTTCAACAGAGGCGCTGCTTTGAACACAGAGAATGAATTTCACAGCAAGGTGAAGACGGCCTGTCAGCAGCAGAGGACAGGAACTGTGGGGTTTAAGATCTCCAAGGTTATTGTAGTTGGTGATCTGGCGGTGGGGAAAACCTGTTTAATTAATAGATTTTGTAAAGATGTCTTTGACAAAAATTACAAAGCTACCATTGGTGTGGACTTTGAAATGGAGAGGTTTGAAGTTCTCGGAGTCCCCTTCAGTCTGCAACTATGGGACACTGCAGGACAGGAGAGGTTTAAATGCATTGCCTCAACATACTACAGAGGAGCTCAGGCTGTAATCATTGTGTTTGACCTGACTGATGTGGCTTCACTGGAGCACACCAGACAATGGCTTGAAGACGCTATGAAAGAGAATGATCCTACCAGTGTATTACTGTTCTTAGTGGGAACAAAGAAAGATCTGAGTTCTCCTGCGCAGTATTCACTAATTGAGCAGGACGCAATTAAAATAGCGGATCAGATGAAAGCGGAGTACTGGGCTTTGTCTGCCTTGTCTGGGGAGAATGTGAGAGACTTTTTCTTCAGAGTCGCATCTTTAACCTTTGAGGCCAATGTACTGGCAGAACTGGAGAAAAGTGGATCAAGGCGTATTGGGGAAGTTGTTCaaatcagcAGCAA
>TCONS_00017901
ATCTGTACGCAGTTCTCGCCGCTTCCGTTCCGTCTGTCGGAGGATCCTGCAATTCTTTATAAACTTGGGAACTGTACGCGATGGACGAATGCTAAAAGCGCCACATGTTTCCGCTTACCCCGTTTCTTTCCAATTTTACTTCTTTGAAGCTATAAAAACTTCCCTATATCAGCACAAGAGAGCATTCATTTCTCAGAAACGACGTCCTGAGAAGCATCATTATGAGTGTACTGCCCCCTGTACGAAAAGACCGCATAATCGGACAGCTTCCTAAGTGCTTCAACAGAGGCGCTGCTTTGAACACAGAGAATGAATTTCACAGCAAGGTGAAGACGGCCTGTCAGCAGCAGAGGACAGGAACTGTGGGGTGAGATGTTATCCTTTGTTAAATCAATGGTTTTGGGGCATTTTCAGGATTGGTGAAGTGATTTTATCCTGTGCTTTTTCGCCTTTTGTCCAGTAGGTTTAAGATCTCCAAGGTTATTGTAGTTGGTGATCTGGCGGTGGGGAAAACCTGTTTAATTAATAGATTTTGTAAAGATGTCTTTGACAAAAATTACAAAGCTACCATTGGTGTGGACTTTGAAATGGAGAGGTTTGAAGTTCTCGGAGTCCCCTTCAGTCTGCAACTATGGGACACTGCAGGACAGGAGAGGTTTAAATGCATTGCCTCAACATACTACAGAGGAGCTCAGGCTGTAATCATTGTGTTTGACCTGACTGATGTGGCTTCACTGGAGCACACCAGACAATGGCTTGAAGACGCTATGAAAGAGAATGATCCTACCAGTGTATTACTGTTCTTAGTGGGAACAAAGAA

Function

symbol description
rab34a Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in endocytosis and phagosome-lysosome fusion. Orthologous to human RAB34 (RAB34, member RAS oncogene family).

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0090385 phagosome-lysosome fusion biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-197 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in endocytosis and phagosome-lysosome fusion. Orthologous to human RAB34 (RAB34, member RAS oncogene family).

Ensembl:

ensembl_id ENSDARG00000045628

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017898 False 1584 mRNA 0.41 11 15459974 15469096
TCONS_00017899 False 785 mRNA 0.45 10 15460552 15468326
TCONS_00017900 False 929 mRNA 0.45 11 15460609 15469079
TCONS_00017901 True 820 lncRNA 0.44 7 15462331 15469096

Neighbor

gene id symbol gene type direction distance location
XLOC_009087 proca1 coding downstream 10045 15445113 ~ 15449929 (-)
XLOC_009086 NA coding downstream 72552 15381488 ~ 15387422 (-)
XLOC_009085 NA coding downstream 84456 15374059 ~ 15375518 (-)
XLOC_009084 ywhag2 coding downstream 102796 15348490 ~ 15357178 (-)
XLOC_009083 NA coding downstream 152223 15303727 ~ 15307751 (-)
XLOC_009091 NA coding upstream 27005 15496101 ~ 15508393 (-)
XLOC_009092 NA coding upstream 200148 15669244 ~ 15675152 (-)
XLOC_009093 NA coding upstream 238969 15708065 ~ 15711173 (-)
XLOC_009094 synrg coding upstream 416753 15885849 ~ 15983428 (-)
XLOC_009095 hnf1ba coding upstream 528053 15997149 ~ 16012963 (-)
XLOC_009081 NA non-coding downstream 429583 15028212 ~ 15030391 (-)
XLOC_009080 CR936977.1 non-coding downstream 575913 14883291 ~ 14884061 (-)
XLOC_009105 NA non-coding upstream 1085286 16554382 ~ 16555173 (-)
XLOC_009107 BX649487.1 non-coding upstream 1228419 16697515 ~ 16697916 (-)

Expression


Co-expression Network