G174445


Basic Information

Item Value
gene id G174445
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 65818 ~ 68661 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU198114
AGTTTATTGCAAGACCACCACTAAGCTTAAAATGCATAAAAACAAGGAGGTGTGAGCCGGACACTATCATATTACAAAATAAACGCAAATTCTGCATCAGATCGGAAATGGGGAGGAAAAAAAACAAAAAAAAACAACAACAGTTCAAAAATATTCATCCAACTACTGAAACATCCAGACCGGTCAAAGACACATGAAACCTTTAGGCAAGAAATCGAAGGGACTGAATTTAAAGTACATCCAAACTCATGCCACCAGAAATCAACATCTACGTCATCAACAATGTCATTGTCATCATCGTCTTCAGGAAGGGTGAGAGGAGTCGAACTTCACTTCAGTAATGACCTGTAAAAACAAAAAGATTTGTTTGTCACAAATCACTAGAGCACTTACACTGCTTTAAGGTTAAACACTCTGGAACCATAAAGCCAGATAGACAACACAAAAGACTTTCATTCAAATTTATTGTGCAGTACTTACGAGGGGAGTAGGAGCGAGAGCGTGATCGTGACCTGTATGGTCCTCTGCCGTAGTATGGAGAGGGGGATCTTCTCCTGTATGACCTGTTGTTGTTGTAGTAGTCACGGTCATCGTAACGATCATATCCACGTTCGTAGCCTCGATCATAGTAATCACGGCGACGACTTACACTCGGACCTCCGCCATATGTTGGTCTGCCCATATATATTCCAGGAGTAGGTGTGTGTGGCCTCTTTGTAATCGAGTAGTCGACTCTAATTCTCCGGCCGTCTAGCTCCATACCATTTGCACGCTCTTTAGCCTAGAACCAAAACAGTCCAGAATAACCCATACTGAGCATGCAATATTCTTCCTGCTTAATGCCATTAATCCCAGGTGTCTTTATTGCTGGCCATAAAATAGCTGGGGGGGAACAATACATACTGTACTTCA
>TU198116
AGTTTATTGCAAGACCACCACTAAGCTTAAAATGCATAAAAACAAGGAGGTGTGAGCCGGACACTATCATATTACAAAATAAACGCAAATTCTGCATCAGATCGGAAATGGGGAGGAAAAAAAACAAAAAAAAACAACAACAGTTCAAAAATATTCATCCAACTACTGAAACATCCAGACCGGTCAAAGACACATGAAACCTTTAGGCAAGAAATCGAAGGGACTGAATTTAAAGTACATCCAAACTCATGCCACCAGAAATCAACATCTACGTCATCAACAATGTCATTGTCATCATCGTCTTCAGGAAGGGTGAGAGGAGTCGAACTTCACTTCAGTAATGACCTGTAAAAACAAAAAGATTTGTTTGTCACAAATCACTAGAGCACTTACACTGCTTTAAGGTTAAACACTCTGGAACCATAAAGCCAGATAGACAACACAAAAGACTTTCATTCAAATTTATTGTGCAGTACTTACGAGGGGAGTAGGAGCGAGAGCGTGATCGTGACCTGTATGGTCCTCTGCCGTAGTATGGAGAGGGGGATCTTCTCCTGTTGTTGTTGTAGTAGTCACGGTCATCGTAACGATCATATCCACGTTCGTAGCCTCGATCATAGTAATCACGGCGACGACTTACACTCGGACCTCCGCCATATGTTGGTCTGCCCATATATATTCCAGGAGTAGGTGTGTGTGGCCTCTTTGTAATCGAGTAGTCGACTCTAATTCTCCGGCCGTCTAGCTCCATACCATTTGCACGCTCTTTAGCCTCTTTTGAATCTTCTCTGTTCTCAAAGTAGACGAAAGCAAAACCCCTGGAACGCCGAGACTGCTGGTCATACACGATGGAGACGTCACTCAGAGGGCCATACTTGGAGAAGACCTCCCTCAGGTCTCTCTCTGTAGTGTACAGGCTCAGCCCAAACACTCCCAGGCAGCAGTTTGGATCTGGGTTTGCCTAAAGATAAAGAAAACATTACAGACTACAAG
>TU198118
AGTTTATTGCAAGACCACCACTAAGCTTAAAATGCATAAAAACAAGGAGGTGTGAGCCGGACACTATCATATTACAAAATAAACGCAAATTCTGCATCAGATCGGAAATGGGGAGGAAAAAAAACAAAAAAAAACAACAACAGTTCAAAAATATTCATCCAACTACTGAAACATCCAGACCGGTCAAAGACACATGAAACCTTTAGGCAAGAAATCGAAGGGACTGAATTTAAAGTACATCCAAACTCATGCCACCAGAAATCAACATCTACGTCATCAACAATGTCATTGTCATCATCGTCTTCAGGAAGGGTGAGAGGAGTCGAACTTCACTTCAGTAATGACGAGGGGAGTAGGAGCGAGAGCGTGATCGTGACCTGTATGGTCCTCTGCCGTAGTATGGAGAGGGGGATCTTCTCCTGTATGACCTGTTGTTGTTGTAGTAGTCACGGTCATCGTAACGATCATATCCACGTTCGTAGCCTCGATCATAGTAATCACGGCGACGACTTACACTCGGACCTCCGCCACTGTATGTTGGTCTGCCCATATATATTCCAGGAGTAGGTGTGTGTGGCCTCTTTGTAATCGAGTAGTCGACTCTAATTCTCCGGCCGTCTAGCTCCATACCATTTGCACGCTCTTTAGCCTTTTGAATCTTCTCTGTTCTCAAAGTAGACGAAAGCAAAACCCCTGGAACGCCGAGACTGCTGGTCATACACGATGGAGACGTCACTCAGAGGGCCATACTTGGAGAAGACCTCCCTCAGGTCTCTCTCTGTAGTGTACAGGCTCAGCCCAAACACTCCCAGGCAGCAGTTTGGATCTGGGTTTGCCTAAAGATAAAGAAAACATTACAGACTACAAG
>TU198119
ATGACAGAATTTTCATTTTTGGGTGAACTATCCCTTTAAGATGCATTTTGGTCAATCAGATCATTCATAATATAAATGCTCATGTGGTTGAATGCGTTCGAACAGCCACAAAAGACTGTGTACTCTCCGCCTACTGACCTAATTCGTAAACATTATGGGACGTGCGCAAGCCAGACGGGATTTAAACTTTGACAGCTGAAGACCCAAGTTAGGTTTGAAGATGAAAAACGTACCAAGCACAATATTCTCTCATCATTCCTGATTTCTAACACGCACTGACAGCGTTCGGCCGGTCATCATGGGCGCGTTTATACGTAAATTGCACAAGCTCTTTTTGTCCATTAGCTCAAAAGATTATGTTGGTCTGCCCATATATATTCCAGGAGTAGGTGTGTGTGGCCTCTTTGTAATCGAGTAGTCGACTCTAATTCTCCGGCCGTCTAGCTCCATACCATTTGCACGCTCTTTAGCCTTTGAATCTTCTCTGTTCTCAAAGTAGACGAAAGCAAAACCCCTGGAACGCCGAGACTGCTGGTCATACACGATGGAGACGTCACTCAGAGGGCCATACTTGGAGAAGACCTCCCTCAGGTCTCTCTCTGTAGTGTACAGGCTCAGCCCAAACACTCCCAGGCAGCAGTTTGGATCTGGGTTTGCCTAAAGATAAAGAAAACATTACAGACTACAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU198114 False 912 lncRNA 0.42 3 65818 68186
TU198116 False 993 lncRNA 0.44 4 65818 68661
TU198118 False 868 lncRNA 0.45 5 65818 68661
TU198119 True 689 lncRNA 0.45 4 67157 68661

Neighbor

gene id symbol gene type direction distance location
CI01000037_00208728_00215104 GLB1L coding downstream 139499 208160 ~ 215104 (+)
CI01000037_00228809_00230442 NA coding downstream 160148 228809 ~ 230730 (+)
CI01000037_00231425_00233108 NA coding downstream 162764 231425 ~ 233108 (+)
CI01000037_00237846_00258273 NA coding downstream 168266 236927 ~ 258750 (+)
CI01000037_00296900_00315382 NA coding downstream 228239 296900 ~ 315683 (+)
G174500 NA non-coding downstream 148967 217628 ~ 217848 (+)
G174551 NA non-coding downstream 349821 418482 ~ 422646 (+)
G174562 NA non-coding downstream 389222 457883 ~ 460548 (+)
G174576 NA non-coding downstream 428418 497079 ~ 497372 (+)
G174580 NA non-coding downstream 435085 503746 ~ 503978 (+)
CI01000037_00987906_00988350 NA other downstream 919198 987859 ~ 989246 (+)
G174949 NA other downstream 1545215 1613876 ~ 1614274 (+)
CI01000037_01965864_01966433 COA5, CB064 other downstream 1897081 1965603 ~ 1966435 (+)

Expression


Co-expression Network