RNA id: unassigned_transcript_1920



Basic Information


Item Value
RNA id unassigned_transcript_1920
length 73
RNA type tRNA
GC content 0.60
exon number 1
gene id trnar-ccu_66
representative True

Chromosome Information


Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8687498 ~ 8687570 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


gccccagtggcctaatggataaggcactggcctcctaagccagggattgtgggttcgagtcccatctggggtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU128431 lncRNA downstream 57291 8627094 ~ 8630207 (-) True G86809
TU128416 lncRNA downstream 58526 8597394 ~ 8628972 (-) True G86798
TU128428 lncRNA downstream 61169 8623297 ~ 8626329 (-) True G86807
TU128385 lncRNA downstream 149292 8535973 ~ 8538206 (-) True G86775
TU128374 lncRNA downstream 174253 8511635 ~ 8513245 (-) True LOC122355061
TU128502 lncRNA upstream 134310 8821880 ~ 8823436 (-) True G86848
TU128508 lncRNA upstream 150781 8838351 ~ 8838612 (-) True G86852
TU128509 lncRNA upstream 153244 8840814 ~ 8841155 (-) True G86853
TU128510 lncRNA upstream 155817 8843387 ~ 8843774 (-) True G86854
TU128514 lncRNA upstream 165375 8852945 ~ 8853257 (-) True G86856
XM_043254245.1 mRNA downstream 5513 8668396 ~ 8681985 (-) True kctd17
XM_043254248.1 mRNA downstream 5516 8668396 ~ 8681982 (-) False kctd17
XM_043254247.1 mRNA downstream 5517 8668396 ~ 8681981 (-) False kctd17
XM_043254240.1 mRNA downstream 48615 8637411 ~ 8638883 (-) True LOC122355697
XM_043254241.1 mRNA downstream 50586 8634892 ~ 8636912 (-) True LOC122355698
XM_043254475.1 mRNA upstream 10923 8698493 ~ 8705084 (-) False l3mbtl2
XM_043254474.1 mRNA upstream 10923 8698493 ~ 8704989 (-) True l3mbtl2
XM_043254476.1 mRNA upstream 11681 8699251 ~ 8704989 (-) False l3mbtl2
XM_043253374.1 mRNA upstream 41239 8728809 ~ 8732989 (-) False cbx7b
XM_043253373.1 mRNA upstream 41239 8728809 ~ 8732988 (-) True cbx7b
TU128398 other downstream 75053 8610552 ~ 8612445 (-) True G86783
XR_006252259.1 other downstream 168389 8518980 ~ 8519109 (-) True LOC122355887
XR_006252260.1 other downstream 169133 8518235 ~ 8518365 (-) True LOC122355888
TU128131 other downstream 327518 8348162 ~ 8359980 (-) False cpped1
TU127575 other downstream 1298588 7388236 ~ 7388910 (-) True G86203
TU128530 other upstream 188047 8875617 ~ 8878112 (-) True LOC122355288
TU128628 other upstream 793989 9481559 ~ 9489290 (-) False ormdl3
TU128627 other upstream 794060 9481630 ~ 9489290 (-) False ormdl3
XR_006252200.1 other upstream 797376 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other upstream 797376 9484946 ~ 9489312 (-) False ormdl3