RNA id: unassigned_transcript_1922


Basic Information

Item Value
RNA id unassigned_transcript_1922
length 74
RNA type tRNA
GC content 0.58
exon number 2
gene id trnai-uau_3
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11084277 ~ 11084370 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTCCAGTGGCGCAATCGGTTAGCGCGCGGTACTTATAATGCCGAGGTtgtgagttcgagcctcaccTGGAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129085 lncRNA upstream 43371 11040668 ~ 11040906 (+) True G87222
TU129065 lncRNA upstream 87283 10996730 ~ 10996994 (+) True G87210
TU129060 lncRNA upstream 96567 10981278 ~ 10987710 (+) True G87207
XR_006252189.1 lncRNA upstream 128482 10954658 ~ 10955795 (+) True LOC122355200
TU129005 lncRNA upstream 144448 10918779 ~ 10939829 (+) False LOC122355308
XR_006252230.1 lncRNA downstream 38553 11122923 ~ 11130890 (+) True LOC122355611
TU129121 lncRNA downstream 140395 11224765 ~ 11227915 (+) True G87238
TU129123 lncRNA downstream 175736 11260106 ~ 11376584 (+) False G87240
TU129127 lncRNA downstream 175736 11260106 ~ 11331801 (+) True G87240
TU129128 lncRNA downstream 175736 11260106 ~ 11419212 (+) False G87240
XM_043253863.1 mRNA upstream 2001 11055694 ~ 11082276 (+) True mta3
XM_043253864.1 mRNA upstream 2001 11055694 ~ 11082276 (+) False mta3
XM_043253865.1 mRNA upstream 2943 11055695 ~ 11081334 (+) False mta3
XM_043253866.1 mRNA upstream 2979 11055695 ~ 11081298 (+) False mta3
XM_043253868.1 mRNA upstream 2979 11055695 ~ 11081298 (+) False mta3
XM_043253791.1 mRNA downstream 57254 11141624 ~ 11162010 (+) False ppm1bb
XM_043253795.1 mRNA downstream 57259 11141629 ~ 11160000 (+) False ppm1bb
XM_043253794.1 mRNA downstream 57263 11141633 ~ 11165042 (+) True ppm1bb
XM_043253792.1 mRNA downstream 57433 11141803 ~ 11162010 (+) False ppm1bb
XM_043253793.1 mRNA downstream 57899 11142269 ~ 11162010 (+) False ppm1bb
XR_006252209.1 other upstream 502522 10542229 ~ 10581755 (+) False svila
XR_006252210.1 other upstream 504281 10542229 ~ 10579996 (+) False svila
TU128882 other upstream 593105 10487620 ~ 10491172 (+) False LOC122355192
TU128881 other upstream 596936 10481615 ~ 10487341 (+) False LOC122355192
TU128819 other upstream 1210382 9871664 ~ 9873895 (+) False LOC122355252
TU129235 other downstream 610474 11694844 ~ 11701655 (+) True G87315
XR_006252241.1 other downstream 852472 11936842 ~ 11944855 (+) False nbr1a
TU129954 other downstream 1648394 12732764 ~ 12737649 (+) True G87817
TU129966 other downstream 1676004 12760374 ~ 12762273 (+) False gall
TU130259 other downstream 2357573 13441943 ~ 13444915 (+) True G88016