RNA id: TU132765



Basic Information


Item Value
RNA id TU132765
length 807
RNA type TUCP
GC content 0.46
exon number 7
gene id comtd1
representative False

Chromosome Information


Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 1008268 ~ 1011247 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


caaacaaaacatggaCTTTCCGCCTTAGTCTAAATAAAAGCCTCACTTGCACACATCACGATTTCACTTGTCTCTAGTTTCTGTTAATTCTGCCTCCTGACATTAAGATGCTTTGTACTATTAGCCTCCTCTTGGCTTTAACAGGACTCTGCAGGTCTGCTCTTATCAGCAAGAGTCACAAAGGAGATGATCCTCTGCTGCAATATGTGGTCAATAACTCTCTGAGGGAGCACCCAGTGCTGACCAAACTACGACTGAGAACTATGGAGGATTCCAAAAACCTGATGATGGTGGCGGCTGAGCAGGCTCAGCTTATGGCTAATCTCGCAAAACTCATAAAAGCCAATAAAACTATTGAGATCGGCATGTACACCGGATACAACGCCTTGAGTCTGGCTCTGGTCGTTCCTGAGAATGGACTCGTGGTGGCCTGCGAAATTAGTGAGGAATATGTGAAAATAGGCAAGCCATTTTTTACTGAGGCGGGAGTGGAAGACAAAATAGATGTTCGCATTAAACCCGCTGTCGAAACCTTAGATGAACTCCTAACTGCTGGTGAAGCTGAGACGTATGACTTTGTGTTCATTGACGCTGACAAAAAGAATTACGACACCTATTACGAAAAGTCACTGCAGCTTGTTCGAAAGGGTGGCATTGTGGCTATCGATAACGTCCTCTGGGGTGGACGGGTCATCAACCCAGCTGAAGATGACCTTTCCTCACAGACCATAGACAAACTGAACAAGAAGCTGCACAAAGATGAGCGCATTGATCTCAGTATGCTCACTGTAGGAGACGGTCTGACAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU132764 lncRNA upstream 69 1007862 ~ 1008216 (+) True G89714
TU132754 lncRNA upstream 43196 960669 ~ 965089 (+) True LOC122356899
XR_006252398.1 lncRNA upstream 43382 960683 ~ 964903 (+) False LOC122356899
TU132723 lncRNA upstream 319836 687427 ~ 688449 (+) True G89675
TU132721 lncRNA upstream 319913 687427 ~ 688372 (+) False G89675
TU132771 lncRNA downstream 10356 1021535 ~ 1021880 (+) True G89718
TU132772 lncRNA downstream 13394 1024573 ~ 1026667 (+) True G89719
TU132779 lncRNA downstream 15794 1026973 ~ 1029295 (+) True G89721
TU132820 lncRNA downstream 68953 1080132 ~ 1164388 (+) True G89754
TU132849 lncRNA downstream 117910 1129089 ~ 1146860 (+) True G89764
XM_043256149.1 mRNA upstream 70556 931312 ~ 937729 (+) True znf503
XM_043256212.1 mRNA upstream 198865 808535 ~ 809420 (+) True LOC122357037
XM_043255569.1 mRNA upstream 330686 563819 ~ 677599 (+) True LOC122356634
XM_043255570.1 mRNA upstream 330686 563819 ~ 677599 (+) False LOC122356634
XM_043255571.1 mRNA upstream 467855 380963 ~ 540430 (+) True LOC122356635
XM_043255940.1 mRNA downstream 366 1011545 ~ 1014177 (+) True ifit8
XM_043255936.1 mRNA downstream 3133 1014312 ~ 1021027 (+) True LOC122356862
XM_043255938.1 mRNA downstream 3133 1014312 ~ 1021027 (+) False LOC122356862
XM_043255939.1 mRNA downstream 3133 1014312 ~ 1021027 (+) False LOC122356862
XM_043255937.1 mRNA downstream 3133 1014312 ~ 1021027 (+) False LOC122356862
TU132671 other upstream 585104 380964 ~ 423181 (+) False G89631
XR_006252315.1 other upstream 631714 323737 ~ 376571 (+) False dlg5a
XR_006252308.1 other upstream 771392 190797 ~ 236893 (+) False fignl1
XR_006252307.1 other upstream 780629 190797 ~ 227656 (+) False fignl1
XR_006252363.1 other upstream 828071 150441 ~ 180214 (+) False klc1a
TU132855 other downstream 127980 1139159 ~ 1140195 (+) True G89770
TU132991 other downstream 458226 1469405 ~ 1470135 (+) True G89846
TU133118 other downstream 570179 1581358 ~ 1602691 (+) False LOC122356486
TU133244 other downstream 829156 1840335 ~ 1842108 (+) False mpc1
TU133255 other downstream 861005 1872184 ~ 1872591 (+) True G90010

Expression Profile