RNA id: XM_043255228.1


Basic Information

Item Value
RNA id XM_043255228.1
length 2495
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC122356486
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 1581358 ~ 1613330 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCGGTTGACGGCGGTTGATTGACAGGATATGTTTGTGTgcactttctattcatcatgGCAGTAGGAATATTGCTCATGCATTCATTTCTCatctctttttgtctctcttgTCAGATTTGGATTAGTGGTTCTTTCCATCATGCCGGTGCTGGTGGACAGGCTTCAGCTTCAGAGAGTGTGAGCTCCACTGAACTGCGGGGATGAACATGCCATTGCACCAAATCTCTGTCATCCCTCgtgatgtcacttcctcccGGGTGTCCAGCAGCGGGAAGGCAAAGGAAAAGGACAAACAGAACGAGAAACCACTCGGTCATTCTGCGAGCAGGTCCAGCAACATTTCAAAGGCTGGAAGCCCGACCTCTGTGACCGCACCCTGCAGTTTTCCCAGGACTTCAGTGACACCCTCAAACCAGGATATATGCAGTTCTAATGACCTCGCTCAGGACCAGAAGCCTTTACAGGCCACTGTAGTGCTGTTGAACTCTAATGGTAAAAGCTCAGCATCTCAGGGTGTCACCATGACCACGCTCTGCCTGGACTCCCCCAACAAGCCCAAAAATAGGACCTTGTTTGGCACAGAATGGCTGTCCTTACTCAAACCATCAGTCAACTTGAAACCAGAAGGAGGGAGTCTCAAGTTCTCAAAGTCTCTGAATGATGTAGGACAAAAGATGGACAGCCTATGTAACGGCCTCCACTTTATAGACCGTACGTGTTCGGATGGGGAGCTGGGAGCCGAGAAGGAACAACTCGTGCAAGACGGCCACATCAAAGCCGTCAATGGTCAAGCCAACTGTCCTCCTCCGTTTGCTTCTCAGcctccatccttcctcaacaacTATAAATACATCTCCAACCCAGGGCCGGAACAGTGCCTGGCTCCCCCTGCACCTCCTCATTCAGACCTTCAAAAAAGCTCCAACTTCCTGCGCCTCATCTTCCCGTTCAATCACTCGTCCACCACAGGGAGCCTGCAGGCATCTGAGATGGGTAGCTATGCCTCAAGGCTGCACATCGGCAAGTCATCCAGCGCCATGCTGGATGTCAGCGAGTCCTGCTGTATGGAGGAGATGGGAGATGACGAGGTGTTCGAGGAGGACTCATCCCGCTGGAAGCTGAAGACTGAGGGCTTGCGGGCTCCTCTTTGCTCCCTTGAGGAGGACAGCGACCTGGATCAGTGCTGCTCTCCGCTGTCTGAGAAAAACGGGCCGCTGTCGCCCTACTCCCTATCGGGGGACTGCTGCAGGATCTGTCACTGTGAAGGTGACGAGGAGTGTCCGCTCATCACCCCTTGCCACTGTACAGGAAGTTTGCGTTTTGTGCACCAGGGCTGCCTGCACCAGTGGATAAAGAGCTCCGACACACGCTGCTGTGAGCTGTGCAAATATGACTTCATCATGGAGACACACCTCAAGCCTTTGCGCAAgtgggaaAAGCTACAGATGTCTACAAGCGAGAGGAGGAAGATCTTCTGTTCTGTGACTTTTCACCTGGCTGCTGTGGTGTGTGTCATCTGGTCACTCTACGTTCTGATTGACCGCACAGCTGAAGAGATACGCCAAGGCAAGAACAATGCGTTGGTGCGTTTGTCCCCTCTCAATGCCGTAGGGGTGCTGGATTGGCCGTTCTGGACCAAGCTCATCGTGGTGGCAGTTGGCTTTGCTGGAGGACTCATCTTCATGTACATTCAGTGCAAAGTCTACCTGCAGCTCTGGAGGAGGCTGAAGGCTTTCAACAGGATCATCTTTGTACAGAACTGCCCCGACACCGTCCGCAACGGAGAGAACAGGCCGGCCCCGGTCACACAGAGCAACGGCACGCACGGGACGGCAGAGGTTCCCGCTCttcagacacaaacaaacacaggagGAGTGGAAATGGCCCCCGTTTGACGACGGGTGCTTGCTGCTTTGAGTCTCAGTAGCTGAAAAGTTTAGGAAAGGGCTCCCTCCTGGTGTATTTGACCAAAGTGATGCGATTTACATAcaacaaaagcacttttttcatttttattagagGGTGGGTAAAGTTACATAAGACGTTTATATAGGGCTATCGAAATATAACATTGTGTGCAATTAACTATATACAAAACATGGTGTAAAACATTATAACATATAATCATACCCTCGATTCAGCTACTTAAATAGAGAAATGAGGGATTTATATTATCTGAGCCATTTAAGCTTAAACAACCTTCATTTTTTTGCAAGTCAGCAGTCATTAAGTCGATTAAAAAGGCAAGACACTACAGGCAAATGGTTCATGTTGAGATTTTGGAGTAGTGTGacaaaaaacatccaaaaacacattcaattaCAATGTATATCTTTAAAGATCTTTTCTCAAAAAGAGTTTTTATACACCAAACTTGGTTTTAATTTACTGAGTGGTTTGCTTATGTATCATTTGCCtgtatttatacaatattttactcttaaaaaacatggtgaaaaagtaatttttcgGACTGTTATACAGTATTCGTGGA

Function

GO: NA

KEGG:

id description
K10656 MARCH1_8; E3 ubiquitin-protein ligase MARCH1/8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132938 lncRNA upstream 25573 1562542 ~ 1562953 (+) True G89815
TU132940 lncRNA upstream 27062 1546927 ~ 1561464 (+) True G89817
TU133000 lncRNA upstream 49172 1538302 ~ 1539354 (+) True G89855
TU132986 lncRNA upstream 137696 1450365 ~ 1450830 (+) True G89844
TU132983 lncRNA upstream 138583 1449046 ~ 1449943 (+) True G89843
TU133149 lncRNA downstream 20334 1633664 ~ 1634590 (+) True G89942
XR_006252344.1 lncRNA downstream 60393 1673723 ~ 1675335 (+) True LOC122356499
XR_006252346.1 lncRNA downstream 64930 1678260 ~ 1679870 (+) True LOC122356501
TU133200 lncRNA downstream 76816 1690146 ~ 1692411 (+) True G89973
TU133201 lncRNA downstream 76816 1690146 ~ 1692045 (+) False G89973
XM_043255226.1 mRNA upstream 210573 1357268 ~ 1377953 (+) True pdzd7a
XM_043255207.1 mRNA upstream 242663 1342096 ~ 1345863 (+) False selenou1a
XM_043255206.1 mRNA upstream 242663 1342125 ~ 1345863 (+) True selenou1a
XM_043255214.1 mRNA upstream 260741 1299234 ~ 1327785 (+) True zgc:154058
XM_043255227.1 mRNA upstream 291593 1292045 ~ 1296933 (+) True LOC122356485
XM_043255222.1 mRNA downstream 69920 1683250 ~ 1685179 (+) True prorsd1
XM_043255816.1 mRNA downstream 155403 1768733 ~ 1770226 (+) True LOC122356760
XM_043255213.1 mRNA downstream 202488 1815818 ~ 1818092 (+) True foxg1d
XM_043255224.1 mRNA downstream 227006 1840336 ~ 1841882 (+) False mpc1
XM_043255218.1 mRNA downstream 247601 1860931 ~ 1864358 (+) True irf1a
TU132991 other upstream 118391 1469405 ~ 1470135 (+) True G89846
TU132855 other upstream 448331 1139159 ~ 1140195 (+) True G89770
TU132765 other upstream 577347 1008285 ~ 1011179 (+) False comtd1
TU132671 other upstream 1165345 380964 ~ 423181 (+) False G89631
XR_006252315.1 other upstream 1211955 323737 ~ 376571 (+) False dlg5a
TU133244 other downstream 227005 1840335 ~ 1842108 (+) False mpc1
TU133255 other downstream 258854 1872184 ~ 1872591 (+) True G90010
XR_006252324.1 other downstream 540092 2153422 ~ 2166028 (+) True tp53bp2a
TU133396 other downstream 562823 2176153 ~ 2180739 (+) False cutc
TU133574 other downstream 856615 2469945 ~ 2470381 (+) True G90230

Expression Profile