RNA id: XM_043255224.1


Basic Information

Item Value
RNA id XM_043255224.1
length 729
RNA type mRNA
GC content 0.48
exon number 5
gene id mpc1
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 1840335 ~ 1842108 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGCGGCAGCGCAGCGCGCGTGCGTGACTCTGTCCTCTAGTTGACGTCGCGTAGCTGCAGCAGCGAGTCGTGTTTACTGTTAACTTCGCGCCAGCTCACTTCTCTTCGTCGTTGTGTCATCTCCTGACGGACCATGGCCGGGACCCTGGCGCGCAAAGCCGTGGATCATCTCCGCAGCAAAGAGTTCAGAGATTACCTCATGAGCACACATTTCTGGGGTCCGGTGGCGAACTGGGGCCTGCCCATCGCCGCCATCAGTGACATGAAGAAGAGTCCAGAGATCATCAGCGGCAGAATGACCTTCGCTCTCACCTGCTACTCGCTGCTCTTCATGCGCTTCGCCTACAAGGTCCAGCCCAGAAACTGGCTTCTGTTCGCCTGCCACTTCACCAACGAAGCCGCTCAGCTCGTCCAGGGCAGCAGACTCATCAAATACAACATGGAGAAGAAGATGGCCAAATAACGGATTACGTGCTCAGACGTCACGGTCATGTTTAGTACTGCAACATCTCATCTGttttaacacaataaataatcattCGGAAACTTAGGTGATTGGTTTTATGCTGTTTTCTCTCTGttacacatttaacattttaagccTTATGACACCGCTTGGAAGGTTATggtttttatgtaatgtagaaatatttgattaatttatttccgTGCTTAATGCGATCAGTAGTTATGTTGGTGAAtatggagaaaataaaacatgtaataatg

Function

GO:

id name namespace
GO:0006850 mitochondrial pyruvate transmembrane transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133236 lncRNA upstream 677 1837979 ~ 1839659 (+) True G89997
TU133238 lncRNA upstream 677 1838206 ~ 1839659 (+) False G89997
TU133178 lncRNA upstream 112185 1701578 ~ 1728151 (+) True G89957
TU133211 lncRNA upstream 124452 1711945 ~ 1715884 (+) True G89981
TU133202 lncRNA upstream 147215 1692435 ~ 1693121 (+) True G89974
XR_006252327.1 lncRNA downstream 19589 1861471 ~ 1862276 (+) True LOC122356489
TU133250 lncRNA downstream 24265 1866147 ~ 1869613 (+) True G90006
TU133254 lncRNA downstream 29808 1871690 ~ 1871892 (+) True G90009
TU133256 lncRNA downstream 31333 1873215 ~ 1873444 (+) True G90011
TU133258 lncRNA downstream 32819 1874701 ~ 1877196 (+) True G90013
XM_043255213.1 mRNA upstream 22244 1815818 ~ 1818092 (+) True foxg1d
XM_043255816.1 mRNA upstream 70110 1768733 ~ 1770226 (+) True LOC122356760
XM_043255222.1 mRNA upstream 155157 1683250 ~ 1685179 (+) True prorsd1
XM_043255228.1 mRNA upstream 227006 1588526 ~ 1613330 (+) True LOC122356486
XM_043255226.1 mRNA upstream 462383 1357268 ~ 1377953 (+) True pdzd7a
XM_043255218.1 mRNA downstream 19049 1860931 ~ 1864358 (+) True irf1a
XM_043255184.1 mRNA downstream 149370 1991252 ~ 1997310 (+) True lgi1a
XM_043255204.1 mRNA downstream 197600 2039482 ~ 2046270 (+) True fbxo28
XM_043255209.1 mRNA downstream 213107 2054989 ~ 2059566 (+) True degs1
XM_043255112.1 mRNA downstream 234291 2076173 ~ 2094028 (+) True wu:fc17b08
TU133118 other upstream 237645 1581358 ~ 1602691 (+) False LOC122356486
TU132991 other upstream 370201 1469405 ~ 1470135 (+) True G89846
TU132855 other upstream 700141 1139159 ~ 1140195 (+) True G89770
TU132765 other upstream 829157 1008285 ~ 1011179 (+) False comtd1
TU132671 other upstream 1417155 380964 ~ 423181 (+) False G89631
TU133255 other downstream 30302 1872184 ~ 1872591 (+) True G90010
XR_006252324.1 other downstream 311540 2153422 ~ 2166028 (+) True tp53bp2a
TU133396 other downstream 334271 2176153 ~ 2180739 (+) False cutc
TU133574 other downstream 628063 2469945 ~ 2470381 (+) True G90230
TU133786 other downstream 1140677 2982559 ~ 2984609 (+) False LOC122356072

Expression Profile