RNA id: TU133258


Basic Information

Item Value
RNA id TU133258
length 2459
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G90013
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 1874701 ~ 1877196 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTTGTTCAGCATAAAGTTCCTCCTCTTCTGTTTGATTGTCACTTGCATGATAAAAGTGCATGTAATGGATATTAGCAATTGTTCTGGAGAAGCCCGCCACAGCAGTCACCACTCCAATGACTGAGATGATACTCAGAGCAAGGCTGGCTGTGATCTGTGAGCAATCAACATATAAATCAACTGAGGATTTATTTACACTGAGTGTAAATAATTAGTTgttagcatttttttctccGTTTTCAAATCTCACAAAGGGAGGCATAGAGGGGAACtcaaggaaaggaaaggaagacAAGGAAGTGGATGTGTGATGGTAACAGGGCATGGCAAAGAGCAGGCAGGTAGGAGGGGTGAtgatgggctgggctctgggTCTGGCTGTGTTCTCAATCAGAAGCAGATGCTCCCCAGACACTGGATGACTGCCTCCCTCCAGCACAGGGGTAAGGGGGTTTAAGGGGCCATCCCAGTTCTTGCATGGCCAGCATGCTCACCAGACACGTCACCCATTGAGCATGTTTGGGATGTTCTGGACAACGTGTTCCAGTTCCTGCAGGTATACAGCAACCTTTCACAGCCATCGAAGAGGAGTGGACCAAGATTTCACAGGCCACAATCAAAAACCTGATCAAATCTATGCGAAGAAGACAAAGCAAATGGTGGCAACACCAACTACTGACTGGTTTTTGGACGCTCCCCCAGACCTACCCAATACATTAAAACTTGGTCTTTTATTGTGGCCCTTTTATTAAGTCACACCTGTGCAAAAATCATGATGTCTAATCAGCATCTTGACATGCCACACCTGTGAGGTGGAAGTGCTCACTAAGAGATTTAGACAACATCCAAGAGAAATAGGCCTTTGGTTGGACAGGCAGGATCACACATAGGGATGTAGAGAccagagacaaacacaaaataaataggaGGACTGTTGAGAGTAATGAATAACACGTACCTGAAAACCAATGACAATAATcatacagagacagaaagatcaAACAGAGCACATGGGAACAGAAACACGACAAAGAGACCATGGTGTGGGACACGAGAACTTTCTCACGCAGTGAAACATGGCTATACAGACACTTACCATCTTTTTGGAGGGATTACGCTCAGACAGTATATACAGAAGACCACAGACAAAGAACTGCAAGAAATGTAGTGTACATTTAGTAAAAACATTGATGATAAGATTTATGATAAGACACATCAGATGAGGCATGTTACACATATTGCTGTTTACTGTCACTGTCAGGGACTATTTCCTCCAGGggaattattacatttacatttgaatacaGTAACAAATGTGTTGTGTGGTaaccattttataaaagcagtgAACCCTGTGAAGCtgtggtttacagtgaatttagaACAGCTAAGAGGCATTTCACAGCTTTagatatatttactgtaaatcacAGCTTCTTGGGTCTTACTGCTTTAACTGAACTCTGAACAAGGCTTGAGCGTATCAGAGAAAAGAGACTAAATGTGTGGAGACATGGACCAGCACTGAAAAGATCATTCACTTACTATGAAAGGAGTTCAATTCATTGATATTCAGTGACTGCAGCTCAAGGTGATGTTAGTTTGAATAAATTGTTTCTCTATTTTTCTGGTTATTTCTCTGTTATGTCTTGCAGTGTTGCTTTGTCCCATCGACAGTGTTAGAattattactgttaattaaACTGAAGTTATTTGGTTACTGACACCATACATTTTTCACAcACAAGGCTAGTAATGGCTAGTAAATCTCTTAAAGGCTTTCAAGGCAAATATAGACAAAAGAGAACATACCCAGAAACCAAGCCAGTATGGGGTGGACTGCTCCTCTGAGATGGGTGCTTCTGATTCTGCATTCATGGGTATTGCAAACATGAACAGACCTATACCCATTATCACTAGGACAACCTTACACAAGGTATATGAAAATGGACAAAACAAATCAGTAAAAATCAATATTCAATATCAATATTGCTCAGGTAGTTTTCACTTTGGGAGGGAAACCGCAATGGACAAATACAGAGACACCTGGTGAAAACCGGTTTGTTACACACTGCAATATCTATGAAGTTTTGAgtcaaaaatacacacatgcttGTTCTTCTTCTTAAGTATAAGAAAGTCTATGTGTATTCTCCCTGTATAAGTGTGTTAAAGCGTGTGGAGATGAATATCCCTACAGAAAGTAAGTATGAAAACTAAATGTCTTCTGAGACACATTCACTCGGGTAAAAGAGTGACAACTAGCTCTGGATTCTGCTGCAGTGCATGAACATTGAACAACATGTTAATTATAGAAGAATGAGCAGCATTGAgttgggtttgtgtgtgttgtgtgtctcACTCCAATGCTCTTGGGTTGTCCTCTAAGGAAGCGGTGCACAGGTTTATTGCCGCCCGTCACGGTGGTAATGGCCTCTGGTTGATCCTCCACCATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133256 lncRNA upstream 1257 1873215 ~ 1873444 (+) True G90011
TU133254 lncRNA upstream 2809 1871690 ~ 1871892 (+) True G90009
TU133250 lncRNA upstream 5088 1866147 ~ 1869613 (+) True G90006
XR_006252327.1 lncRNA upstream 12425 1861471 ~ 1862276 (+) True LOC122356489
TU133243 lncRNA upstream 32593 1840335 ~ 1842108 (+) True mpc1
TU133264 lncRNA downstream 24420 1901616 ~ 1901893 (+) True G90015
TU133265 lncRNA downstream 26561 1903757 ~ 1904718 (+) True G90016
TU133266 lncRNA downstream 27704 1904900 ~ 1905184 (+) True G90017
TU133267 lncRNA downstream 28512 1905708 ~ 1906141 (+) True G90018
TU133268 lncRNA downstream 29288 1906484 ~ 1906687 (+) True G90019
XM_043255218.1 mRNA upstream 10343 1860931 ~ 1864358 (+) True irf1a
XM_043255224.1 mRNA upstream 32819 1840336 ~ 1841882 (+) False mpc1
XM_043255213.1 mRNA upstream 56609 1815818 ~ 1818092 (+) True foxg1d
XM_043255816.1 mRNA upstream 104475 1768733 ~ 1770226 (+) True LOC122356760
XM_043255222.1 mRNA upstream 189522 1683250 ~ 1685179 (+) True prorsd1
XM_043255184.1 mRNA downstream 114056 1991252 ~ 1997310 (+) True lgi1a
XM_043255204.1 mRNA downstream 162286 2039482 ~ 2046270 (+) True fbxo28
XM_043255209.1 mRNA downstream 177793 2054989 ~ 2059566 (+) True degs1
XM_043255112.1 mRNA downstream 198977 2076173 ~ 2094028 (+) True wu:fc17b08
XM_043255113.1 mRNA downstream 199654 2076850 ~ 2094028 (+) False wu:fc17b08
TU133255 other upstream 2110 1872184 ~ 1872591 (+) True G90010
TU133244 other upstream 32593 1840335 ~ 1842108 (+) False mpc1
TU133118 other upstream 272010 1581358 ~ 1602691 (+) False LOC122356486
TU132991 other upstream 404566 1469405 ~ 1470135 (+) True G89846
TU132855 other upstream 734506 1139159 ~ 1140195 (+) True G89770
XR_006252324.1 other downstream 276226 2153422 ~ 2166028 (+) True tp53bp2a
TU133396 other downstream 298957 2176153 ~ 2180739 (+) False cutc
TU133574 other downstream 592749 2469945 ~ 2470381 (+) True G90230
TU133786 other downstream 1105363 2982559 ~ 2984609 (+) False LOC122356072
TU133784 other downstream 1105547 2982743 ~ 2984609 (+) False LOC122356072

Expression Profile