RNA id: XM_043255184.1


Basic Information

Item Value
RNA id XM_043255184.1
length 4046
RNA type mRNA
GC content 0.42
exon number 8
gene id lgi1a
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 1989872 ~ 1997310 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAATATTGAGGCTATTGTCAGCTAGCTAACTtccaactgaaaaaaaattgaatgtttattatattaaccTAAGAGTATTAGTAGATTTAGGTAGGGTAGGTAGAACATTCACATATTTCTAAGGTATCCTATACTCAGTATGTCTGTTGAGAAACcatcaaaacaaagtgttaGCATGTATTTAGCGACACACTGCTAATACTCTGATGAAggctagctgacatgtagttaaGAGTTACTTATCAACAGCTGTCTAAAGGGTaccataaaaatgataaaactgatattatatataaaacattaaaattaaaaatcaaagcaaatgtGTCACACATTCATCTGATGTGATATCTGATCTTATTGCTGTTTAAGGGGGgacattttttataatagtatagttattattattacttataagtGGTATTTGACCACTTCAGGTAAAGTAACATaagtaaaatggcaagatatgagaaatataatccattAACTTAAGTGGATAAATGATCATACTATAatcacaaataagtaaatattataacacattaaaaccatCCAAGAGATTATACATTCATTATACATGCATTATAAAGCCTTAAGAAACCCCtcataatgtaaaaatacgTTTCATAGAAAGTGTCACCCCAAGTTCATTcgaaatagaaaagaaagaaatctttgTACCACATCTAAGTGTTATGAGTAGACGTGTTCCTGTCAGAGGATTTCTCTCCAGGTGGCGCTGAGGCTCAAGAAGCAGCTCCTCCACCGATTCACATCCAGATCTTTCATTTGCAAgtataaattaaaacttaaaacgtTCAAAATGGCCATTTGATGTGCTTGTTCCTTCCCCTGGAGATCTGCGTCGcaatcatatatttaattattgattaaaaaGCTCTCGTCGGTAATCAAACGAAGGTTAGTGGTTCGTTCTGCTCAGCGCTGAGGAAAGTAACACGACCCACGTGACTCTGGACGCGCGCTGCTTCACACGTAGCCATGAGAAATAGCTTGATGTCACGGGCAAATTTCACTAGACGATACAATTTAAGGTACACGGcgagtaaataaaaataaatggaaatccGCCGTGTCTGACCAGTTTGAAACAAGTGGATGGGCTAAGCCCCGCCCATTCCCCGACTGTGATGCTGATCGCCTTTCTCTGCGCGGAGCGTGTTTTTGTGGATTCTACCTGCTTGTGCGGTTAACACAGTTTTAGACAAACAACGACATCAGCAACACCTTGTCATTCGGTGGATTCCTCTCCGTTATGAGCTCGTTGCTCGCACCGCGTCGGTGAAGGCTCGGGTTCGGTGAAGATGGGTCTCAGGAGGACCGCGCTGCTCTTCTTCTTGTGCTCGCTGACGCTGGTTCTTCACGGCAGCCGCAGGAGACACGCGCGCTGCCCCGCGTCATGCACGTGCAGCAAAGATAACGCCTTGTGCGCCAGCACCGGATCGATACCGAGGAGCTTCCCGCCGGATGTCATCTCACTATCATTCGTCAAGTCCGGCTTTAATGAAATCCCTAAAGAGAGTTTCATTCACACGCCAGCCCTCCATCTTCTACTTTTCACAGCAAACAACTTTGATTCCATAAATGAAGATGCGTTCCTCGGTCTTCCTCACCTGGAGTATCTTTTCATTGAAAATAACCAAATCAAGTCCATATCGCCGTTTGCCTTCAGAGGACTCAAGTCCTTAATACATTTAAGTTTGGCGTACAATAATTTGGAGACACTACCGAAAGATCTTTTCAAAGGGATGGAAGCTTTGACTAAAGTGGATCTGAGAGGGAATCTTTTCAGCTGTGACTGTAAGTTAAAGTGGTTAGTCGACTGGATGTTTCACACAAATGCAACTGTAGATCAGATCTTCTGCAATGGCCCTGAAGCTTACCAGGGCAAGAAGATCAATGACCTTGTGGCACAGTCATTTGATTGCATAACAACAGatttttcattGCTGAAGTCTCTTGACTTTCAGTCCATTTCCGTCGAGGCCTTTGGGTTTGGCGGAGACCAGTTTGTTGTCTTCGCCCAGCCTTTCATCGGCAGGTGTAGTTTCATGGAATGGGATCACGTACAAATGGAGTTCAGGAACTTTGATAATATCACAAGCACCTCCACCGTCATCTGCAAACCTCTAGTCATCGACGGTCAGCTCTTCATTATAGTAGCCCAACTGTTTGGAGGCTCACACATCTTCAAGCGAGATGTCTCCGCAAACAAATTTATCAAAATCCAAGACATCGACATTCTGAAAGTCCGAAAGCCAAATGATGTGGAAATCTTCCACGTCGACGAAGAGTCTTTCTTCATCATAGCCGACAGCTCCAAGGCCGGCTCGACAACTATTTATAAGTGGAACGGCAACGGCTTCTACTCCCATCAGTCTTTGCACCCCTGGCACCGTGACACTGATGTGGAGTATCTGGAGATTTCTGGGAAGCCTCATCTGATCTTGTCCAGCAGCTCTCAGAGGCCGGTCATCTACCAGTGGAACAAGAGCACCAAGCAGTTTGAACGGCGCACGGATATTCCAGAGATGGAGGACGTGTACGCGGTCAAACACTTCACCGTGAAGAGCGAGCTCTACATATGCCTGACCCGCTTCATCGGTGACTCCAAGGTGATGAAATGGGATGGCAACATGTTCACTGAGATCCAGACCATGGCCTCTCGTGGCTCCATGGTCTTCCAGCCGTTCTCGATAGCCAGCTGGCAGTACGCCATCCTAGGCAGCGACTACGCCTTTACTCGGGTCTATCGCTgggacgcaaagaaaagacagTTCATTCACTTCCAGGAACTGAACATTCAGGCACCCAGGGCTTTTTCTCTGGTGTTTATTGACAACAGGGAGTTCCTTCTTGGCTCTAGTTTTAAGGGGCAGACACGTATATATGAACACCTGGTCCTTGACTTGAGTAGCTGATTTGCTTCATCGGGACGGTTGAGGACTCAGTGGATCTCGCAAAGAACCTGTCCAAAACACGCCCAGGTCATGTTTACTAttgtttaaagtaaatgaaGCCTGTTTTAGGCTCTCTATAGTGTTACCTTCTTTTTTGTACTGTACTGCTTAGTGTTCAGGTGAAATATTATCACCATGCCTAAAACTCATAGCTGCCCTAAATGggcttcattttctttctgcaaaacactttttcccctTTTGATTTTGGAGTGAAATATGACTAAGACGTTTTCATCAGATTGACCCTCCTCTTCTCAGCATGAAGACTCTTTGCATGATGGTGCCGTTAAGTAGGTACCGCCATTGAAATTATACAAgggtttggtttttttacattatgttcTCATTGCACTCATTCATTTCTGTTGGTGTTTTTACTCTGTGACTACTGTATTTTCATTGAAATACTTGCTAtcctatttattaatgtttatctCGACTGAAACGGACAACTTGTTTACTGCTTTCTGTGTGGCAGCTGGGTGAAATAATTGATATGCAGATTGGAAATTTGAAATACACAAACAGTTTGACCCTGAGTAGTGTGTAGTGTTACCATTGTTTTTTAGCATTTGCCTGTTTGTTTGAATCTTATTAACTACTAACCAGTGTCAGTACTTTTTTCAACAAgatgaaaatatttgtaaagaGATGAAGAGATTCTATATCCCGACATAATGAAACTGATGTTGTTTTACTGGATACGTTTATGCATGCAGTTTCATGCCTACATTTGAGACACTGATAGtaactttaaataaagactTTCCAGAATGTTAAATGTTGTATATTGTCAAACTGCGAGAGGTCATTTTTCAGTGATTCAGGATGAAATTACTTTCTTTCCACTTGGAAAAAGAAATTTTGTGGGCTGTTGTTCTGAAAAAAGTTCATGACCATTCAATAATGTGTGTCACTGCCATTAGACACATTTGGCATTAGTTGTAATCCAACACAGCTAAGCCAGCGAAGACTGGAGACTCCAGGAAGGTGTGTTTAACCCGCACCCTGGTTTTTAGATCACCAGGAAGTGATCATAACATTATATGACTATTTGAATGA

Function

GO:

id name namespace
GO:0007626 locomotory behavior biological_process
GO:0007420 brain development biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133273 lncRNA upstream 77534 1912360 ~ 1913718 (+) True G90024
TU133272 lncRNA upstream 78950 1911993 ~ 1912302 (+) True G90023
TU133271 lncRNA upstream 81010 1910009 ~ 1910242 (+) True G90022
TU133270 lncRNA upstream 81259 1909595 ~ 1909993 (+) True G90021
TU133268 lncRNA upstream 84565 1906484 ~ 1906687 (+) True G90019
TU133281 lncRNA downstream 11657 2008967 ~ 2009973 (+) True G90031
XR_006252341.1 lncRNA downstream 12886 2010196 ~ 2012985 (+) True LOC122356496
TU133297 lncRNA downstream 19873 2017183 ~ 2034567 (+) True G90034
TU133308 lncRNA downstream 38027 2035337 ~ 2035837 (+) True G90041
TU133375 lncRNA downstream 54725 2052035 ~ 2052305 (+) True G90088
XM_043255218.1 mRNA upstream 126894 1860931 ~ 1864358 (+) True irf1a
XM_043255224.1 mRNA upstream 149370 1840336 ~ 1841882 (+) False mpc1
XM_043255213.1 mRNA upstream 173160 1815818 ~ 1818092 (+) True foxg1d
XM_043255816.1 mRNA upstream 221026 1768733 ~ 1770226 (+) True LOC122356760
XM_043255222.1 mRNA upstream 306073 1683250 ~ 1685179 (+) True prorsd1
XM_043255204.1 mRNA downstream 42172 2039482 ~ 2046270 (+) True fbxo28
XM_043255209.1 mRNA downstream 57679 2054989 ~ 2059566 (+) True degs1
XM_043255112.1 mRNA downstream 78863 2076173 ~ 2094028 (+) True wu:fc17b08
XM_043255113.1 mRNA downstream 79540 2076850 ~ 2094028 (+) False wu:fc17b08
XM_043255114.1 mRNA downstream 90228 2087538 ~ 2094028 (+) False wu:fc17b08
TU133255 other upstream 118661 1872184 ~ 1872591 (+) True G90010
TU133244 other upstream 149144 1840335 ~ 1842108 (+) False mpc1
TU133118 other upstream 388561 1581358 ~ 1602691 (+) False LOC122356486
TU132991 other upstream 521117 1469405 ~ 1470135 (+) True G89846
TU132855 other upstream 851057 1139159 ~ 1140195 (+) True G89770
XR_006252324.1 other downstream 156112 2153422 ~ 2166028 (+) True tp53bp2a
TU133396 other downstream 178843 2176153 ~ 2180739 (+) False cutc
TU133574 other downstream 472635 2469945 ~ 2470381 (+) True G90230
TU133786 other downstream 985249 2982559 ~ 2984609 (+) False LOC122356072
TU133784 other downstream 985433 2982743 ~ 2984609 (+) False LOC122356072

Expression Profile