RNA id: TU133318


Basic Information

Item Value
RNA id TU133318
length 1695
RNA type TUCP
GC content 0.58
exon number 4
gene id LOC122356758
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 1684449 ~ 1692354 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCCTGCGCAGGCCGGTCTCTCAGCGTCCGGAGCGGTGTCCAGAGAGCGTGTGAAGAGCCGGGGCATCCTGCGCTCGTCCAGCGGTAAGGCCTCAGCAGGAGCCGGTCAGCCGGGCCGCCCCAGCCTGCGCAAGGCCGAGAGCACCCGGGCCAGAGGGTCGGCGCCGCCCCGAGCCGGTCTGTCTGCGCAGAGCAAGGCCTCGTCGGCGTCGCTGTCGGAGCGTCTGGACACGGCCGCCGGGCTGCCCCGCGCCAGCAGCGTCATCTCCACGGCCGAGGGCTCGGTGCGCCGCACCAGCATCCACGAGCTGCTCTCCAAGGACAGCCGTCAGCCCGTGCTGGTGGACCCGGCGCCCGCACGCCCCCAGAATGTGGAAGTGTTACAGGAAAACAGGAAGTCTAAGAGCAGAGGCGGAGCTCAGAGTCTGTCCTGAATTCACACGACAGAGTCACCGTCTGAAGACCGGCACAATCCTACAACCTCCTGCCATGAGAAACCAGCCGTTTCTCTCTTTTGTAATCATGAACCCTCagcaatgaaaacagaaaatacgtCCTTTTCCTTGAATCAAGGAAGCAGAAGGAGTCTTTGAGAAGCTGGGGTTGGTCTCACTCCCTCCTGATCACCGCTGCATGTGTGCTGCTCATCTGACCTGCAGAAAACACCCGAGGAAAGCCTGGACACCAAAAACATGAGGaccgagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagtgtgtgtgtgtgtgtgagagagagagtgtgtgtgtgtgtgtgtgtgagagagagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagtgtgtgtgtgtgtgtgtgtgtgagagagagtgtgtgtgtgtgtgtgtgtgtgtgtgagagtgtgtgagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagtgcgtgcgcatgcgtgtgtgtgccaAAAGACAGCGTTACTCCTGTGTGAACGCCACATACCGCTTCATTCCTCTTTTCATAAATTAAATCAGTGTGATGAACGTCACGACGCCTGTCTTATTCTCACTCAAGGAGAACATGTTTGTTACACAGAGCTGGTAAAACTGATCAGAGGAGTACTTCTAATCAGATTAAATTAGACTTTAAAACACTCCTCGTCAGACCAGTGTTGTGTGTCCTGGAGCGGTGATGTGTGTCCTCTCAGTCGAAGCTCAGGATGACGGGCGGGTGTCCGGTCTCGGTCAGGAAGCGCAGCAGGTCGTCCGGTCTCAGGCCCAGGCTGGCGCTGTTGGTCATGGGGTGGAAGTAGAGGCGCTGGTGCTCGCCGTGGGTCAGGTCTCGGTCCAGCACGGCCGTCACGCTGCGGTCGGTGTCACAGAAGAGCGCGAGGGCCGAGGCGCAGCCCTGACCCACCTGCAGCGCGTCCAGCATCACGGCCTCGTCTGCCAGACGCAGGTTCCCCGCTCCCAGCCCCAGACGTCTGGACACCTCGCTCAGGTTCAGCTCGCGGTCGTGACGCACGCTCAGCAGCCACAGGCGCTTCTTCTTCTTGTCCTTCAGGAACAGGTTCTTAGTGGCCATGCCGCTCAGGTGAGACAGGTGTGGCATCATCTGCTCCACCGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133330 lncRNA downstream 1374 1682024 ~ 1683075 (-) True G90053
TU133329 lncRNA downstream 4538 1679111 ~ 1679911 (-) True G90052
XR_006252335.1 lncRNA downstream 6323 1677535 ~ 1678126 (-) True LOC122356491
TU133106 lncRNA downstream 176741 1504790 ~ 1507708 (-) True G89918
TU133107 lncRNA downstream 180310 1503350 ~ 1504139 (-) True G89919
XR_006252331.1 lncRNA upstream 78377 1770312 ~ 1775927 (-) False LOC122356490
XR_006252328.1 lncRNA upstream 78377 1770312 ~ 1775927 (-) True LOC122356490
XR_006252329.1 lncRNA upstream 78377 1770312 ~ 1775926 (-) False LOC122356490
XR_006252330.1 lncRNA upstream 78377 1770312 ~ 1775924 (-) False LOC122356490
XR_006252332.1 lncRNA upstream 78377 1770312 ~ 1775924 (-) False LOC122356490
XM_043255141.1 mRNA downstream 7704 1663428 ~ 1676745 (-) True rtn4b
XM_043255142.1 mRNA downstream 7705 1663428 ~ 1676744 (-) False rtn4b
XM_043255145.1 mRNA downstream 7709 1663428 ~ 1676740 (-) False rtn4b
XM_043255144.1 mRNA downstream 7709 1663428 ~ 1676740 (-) False rtn4b
XM_043255146.1 mRNA downstream 16693 1663428 ~ 1667756 (-) False rtn4b
XM_043255815.1 mRNA upstream 489 1692424 ~ 1725306 (-) True ccdc88ab
XM_043255147.1 mRNA upstream 36288 1728223 ~ 1736533 (-) True ppp4r3b
XM_043255148.1 mRNA upstream 36288 1728223 ~ 1736530 (-) False ppp4r3b
XM_043255149.1 mRNA upstream 36288 1728223 ~ 1736529 (-) False ppp4r3b
XM_043255172.1 mRNA upstream 45284 1737219 ~ 1747127 (-) False LOC122356447
TU133116 other downstream 127446 1556169 ~ 1557003 (-) False LOC122356439
TU132509 other downstream 1507129 123194 ~ 177320 (-) True G89543
TU132495 other downstream 1616573 67327 ~ 67876 (-) True G89537
TU132489 other downstream 1635650 47522 ~ 48799 (-) False LOC122356184
TU132490 other downstream 1652263 28996 ~ 32186 (-) False LOC122356752
TU133469 other upstream 459902 2151837 ~ 2245078 (-) True G90161
TU133689 other upstream 892261 2584196 ~ 2585331 (-) True G90304
TU133704 other upstream 934393 2626328 ~ 2627157 (-) True G90311
TU133931 other upstream 1298483 2990418 ~ 3021862 (-) True G90445
XR_006252267.1 other upstream 2981031 4672966 ~ 4689168 (-) False LOC122356061

Expression Profile