RNA id: XR_006252333.1


Basic Information

Item Value
RNA id XR_006252333.1
length 1516
lncRNA type inter_gene
GC content 0.44
exon number 6
gene id LOC122356490
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 1770312 ~ 1775927 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGTCATAAAAAACaatctataaaatgtatgttaattgTATGTCAGTAAATTGATTGACATAGCAGTGATCGTCCAATCGCGTTAGATTGGATCAGAAGCCCCGCCCACCACGTTAGCCGCTAATGGTAGGcgccattttagtttttctccttGAGATTCACGAGACGAGCAGCAAAATAACAGAAGCAGATAAAAGTTCCAAAAAATTAATCTtcctttgtttatttctttggaTTTTGAACAATAACCACCTGAAGACACCCTGTAATGAGAGATCACCCTCCCAATGAGTCTCTTCACTGGGTTTGACAAGTCGTTCCCTGTTTGTCGTGAAAAAttcagACACCAGTTCTAGTTCCTCCTGCCACATCAGACTCTGCTGTATATATGGAGACCCTTCATGTTGTGTGCTTTTCATTATTGTGCATGCAGTTATAATTCAGGCATACGCTAAGCAGAAGTTTCAGGACCGTTCAAAGGATTATGCGTTCTTCTTTCGTGTGGTCGCAATGTGGTAAGTTATTTACTTTGACAGTCTTGCAATACGTAAAGAAAATGTGGGGTAATTGTAATGTCTGCTAAATTAGTCCCAAAAAGGCTGCGTCTCATTTACAATAACAAAGTCAGTATCATCTGATCTACTTGTTACATCTAAGAAGTATGGCATctttgctaatattagtctgttttatTCTTATTCCGAGGTCACTGGATCAAGtctgtatccagatcagatggtggagaCAACTCTACAGACCTGAATGTGAGCAGAGACCGTGTCAACTAGATGAGCCCCAAAGACAGATCCCCAGTGAAGACCTCATTAACTATACAGCCATTGACACCAAACCTCAGCAAAGACCACAATGACAAACACCATGTTGCTTCATCTGGACAGGTTCTTCTCCATTCTTGGCTTGCTTAATTTGGGacaattcatttttgggtgtatTAACGACTTAATTGCCGAGACACTGAAGGTAAGTGAACTGAGCTGGATGATTATGACATCACTGAATCAACGATGATCTGTATTGTGTgaagtgctatatatatatataacctagGGTTTGTCAAAAGAAGTATGTCCGTATGTACAATATGTACACATCCCTCCGGAAGCAGTACCGCCAGACGCAAATACTGCTTCCTCAAGCCGGGGCGCAAGACGCTACACGAGGCCTGCTCGCCCCGCAAGACGCAAAGGTGAGAGGAGGGATGAAGAGACGCCAACTGGAGCGGTCCTACAAGAGGGCCTGAAACAAAACGGAAAGAGAACGGGTCGGACCTTTTGGTTCCTTCCCACCAGTAATGAATTCTTTATAGCCGGTCTCAGGTTCCCTACCATAAACCAGCTGTGGAACACGATTTGCCCCAAACCAAGTCTCCGGATGGGCTTTTCTTGGAGGAGAGCCCCGAGGAGGTCACAGCATTCTGTGCAGGCCAGGTTTGGACCAGCGCTTCTTCTGCAGCAGCAACAGGTCATGGTCGCTAGGGAAGTGTCCACACAACAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133330 lncRNA downstream 87237 1682024 ~ 1683075 (-) True G90053
TU133329 lncRNA downstream 90401 1679111 ~ 1679911 (-) True G90052
XR_006252335.1 lncRNA downstream 92186 1677535 ~ 1678126 (-) True LOC122356491
TU133106 lncRNA downstream 262604 1504790 ~ 1507708 (-) True G89918
TU133107 lncRNA downstream 266173 1503350 ~ 1504139 (-) True G89919
TU133344 lncRNA upstream 2544 1778464 ~ 1779529 (-) True G90064
TU133356 lncRNA upstream 95461 1871381 ~ 1871732 (-) True G90074
TU133358 lncRNA upstream 111486 1887406 ~ 1887609 (-) True G90076
TU133360 lncRNA upstream 131396 1907316 ~ 1907538 (-) True G90078
XR_006252336.1 lncRNA upstream 276111 2052031 ~ 2054891 (-) False LOC122356492
XM_043255205.1 mRNA downstream 8813 1750546 ~ 1761499 (-) True cfap36
XM_043255172.1 mRNA downstream 23185 1737219 ~ 1747127 (-) False LOC122356447
XM_043255171.1 mRNA downstream 23185 1737219 ~ 1747127 (-) False LOC122356447
XM_043255169.1 mRNA downstream 23186 1737219 ~ 1747126 (-) True LOC122356447
XM_043255149.1 mRNA downstream 33783 1728223 ~ 1736529 (-) False ppp4r3b
XM_043255199.1 mRNA upstream 4061 1779981 ~ 1805546 (-) False LOC122356460
XM_043255198.1 mRNA upstream 4061 1779981 ~ 1805545 (-) False LOC122356460
XM_043255197.1 mRNA upstream 4061 1779981 ~ 1805545 (-) True LOC122356460
XM_043255182.1 mRNA upstream 52163 1828083 ~ 1839665 (-) False slc30a6
XM_043255181.1 mRNA upstream 52163 1828083 ~ 1839665 (-) True slc30a6
TU133318 other downstream 78377 1684449 ~ 1691935 (-) True LOC122356758
TU133116 other downstream 213309 1556169 ~ 1557003 (-) False LOC122356439
TU132509 other downstream 1592992 123194 ~ 177320 (-) True G89543
TU132495 other downstream 1702436 67327 ~ 67876 (-) True G89537
TU132489 other downstream 1721513 47522 ~ 48799 (-) False LOC122356184
TU133469 other upstream 375917 2151837 ~ 2245078 (-) True G90161
TU133689 other upstream 808276 2584196 ~ 2585331 (-) True G90304
TU133704 other upstream 850408 2626328 ~ 2627157 (-) True G90311
TU133931 other upstream 1214498 2990418 ~ 3021862 (-) True G90445
XR_006252267.1 other upstream 2897046 4672966 ~ 4689168 (-) False LOC122356061

Expression Profile