RNA id: TU133356


Basic Information

Item Value
RNA id TU133356
length 352
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G90074
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 1871381 ~ 1871732 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCATCAGAGATCGACTGGAACACGGAAACGAGCGGCACGTGGTGGGAACGGGGCTTTAACGCATGCGTTTGAGTTTTGACGCGTCCGGCGTTCCGTACAGCGTGGCGCGGTTACCATTCCGCAGCGTCGCGTGATTTTGAATTCGCAGACAAGACATGAACATAGAGCTCGGCCTGCCGGGGGCGGGGCGAGTCACAGCCCCTACTTACGATTGGTCAAATGAACAGCGGAAGTGTTATCCGACTGATCAGAACGACGGCGGACTTTTAGTTTTTAACGAGTGAAACAGTCGTTTACGGTTTTCATGTTCTATCTCTCggttaaattaacatttaatggaTTCCTCTTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133344 lncRNA downstream 91852 1778464 ~ 1779529 (-) True G90064
XR_006252331.1 lncRNA downstream 95454 1770312 ~ 1775927 (-) False LOC122356490
XR_006252328.1 lncRNA downstream 95454 1770312 ~ 1775927 (-) True LOC122356490
XR_006252329.1 lncRNA downstream 95455 1770312 ~ 1775926 (-) False LOC122356490
XR_006252330.1 lncRNA downstream 95457 1770312 ~ 1775924 (-) False LOC122356490
TU133358 lncRNA upstream 15674 1887406 ~ 1887609 (-) True G90076
TU133360 lncRNA upstream 35584 1907316 ~ 1907538 (-) True G90078
XR_006252336.1 lncRNA upstream 180299 2052031 ~ 2054891 (-) False LOC122356492
XR_006252337.1 lncRNA upstream 180299 2052031 ~ 2054891 (-) True LOC122356492
TU133453 lncRNA upstream 182025 2053757 ~ 2053960 (-) True G90150
XM_043255177.1 mRNA downstream 104 1864531 ~ 1871277 (-) True ddx21
XM_043255132.1 mRNA downstream 18408 1842307 ~ 1852973 (-) True chs1
XM_043255182.1 mRNA downstream 31716 1828083 ~ 1839665 (-) False slc30a6
XM_043255181.1 mRNA downstream 31716 1828083 ~ 1839665 (-) True slc30a6
XM_043255199.1 mRNA downstream 65835 1779981 ~ 1805546 (-) False LOC122356460
XM_043255221.1 mRNA upstream 1887 1873619 ~ 1877710 (-) True si:ch1073-291c23.2
XM_043255157.1 mRNA upstream 27305 1899037 ~ 1920625 (-) False vit
XM_043255153.1 mRNA upstream 27305 1899037 ~ 1920625 (-) False vit
XM_043255158.1 mRNA upstream 27305 1899037 ~ 1920625 (-) False vit
XM_043255155.1 mRNA upstream 27305 1899037 ~ 1920625 (-) False vit
TU133318 other downstream 179446 1684449 ~ 1691935 (-) True LOC122356758
TU133116 other downstream 314378 1556169 ~ 1557003 (-) False LOC122356439
TU132509 other downstream 1694061 123194 ~ 177320 (-) True G89543
TU132495 other downstream 1803505 67327 ~ 67876 (-) True G89537
TU132489 other downstream 1822582 47522 ~ 48799 (-) False LOC122356184
TU133469 other upstream 280105 2151837 ~ 2245078 (-) True G90161
TU133689 other upstream 712464 2584196 ~ 2585331 (-) True G90304
TU133704 other upstream 754596 2626328 ~ 2627157 (-) True G90311
TU133931 other upstream 1118686 2990418 ~ 3021862 (-) True G90445
XR_006252267.1 other upstream 2801234 4672966 ~ 4689168 (-) False LOC122356061

Expression Profile