RNA id: XM_043255824.1


Basic Information

Item Value
RNA id XM_043255824.1
length 1071
RNA type mRNA
GC content 0.54
exon number 9
gene id cutc
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 2176009 ~ 2180829 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGAATCGGTTCTAACGGATCTCGAGTCATCGACTCGCTGAATCAAGAACAGACGTGTCGGGTGCAGAGTTGCCAGGCCTGCTGTTTTACCGCGAATCCGAGCTGCTTGTATACTCTTACCGCGAGCGATTTTTTCGAGTTAAAACTATCCCTCCCTTCTCCCTTCTTAAGCGTTTCCAAATCGGGTGAAAACCGCGGAAAAACACCATTAGGCTAGCCTTGAATCGCACTTGTGCTCGTTTTCTTTCgcaaacctggcaaccctgactGTGAACCACTTCCGGAGCCGGACGTTCACGCGAGATGTCCGACGGTTTCTTGATGGAGGTGTGTGTGGACTCGGTTGAGTCCGCCATCAGCGCAGAGCGGGGAGGTGCCGCTCGGGTGGAGCTCTGCTGTAGTCTGCTGGAGGGAGGACTGACGCCCAGCTCAGGCTTGTTGCAGGTGGTCAAGGAGAACGTGAGGATCCCGGTGTATGCCATGATCCGGCCCCGCGCCGGGGACTTCCTCTACTCCGACTGGGAGGTGGAGGTGATGAAGAGAGACATTGAGCAGATGAAGATTCACAGAGCAGATGGGCTGGTGTTTGGAGCGCTGACGGAAGACGGCCGTGTAGACACCGAGCTCTGCATGGAGCTGCTGGCGGCCAGTCGACCTTTGCCAGTCACGTTTCACAGAGCGTTCGATATGGTCCACGATCCGGCGGTGGCGTTAGAGGCTCTGATCTCGCTGGGCTTCGAGAGGATTTTGACCAGCGGCTGTGACAGCTCTGCGCTGGAAGGTCTGCCCGTGATTAAACGTCTGGTGGAGCAGGCAAAGGGCAGAATAGTAATAACGCCAGGAGGTGGAATCACCGAGAGGAACCTTCAGAGGATTCTAGAAGCTTCTGGATCTCAGGAGTTCCACTGTTCTGCTCGCTCCAGCAAGGACTCCAGCATGAAGTTTAGGAATGGTAATGTGAGTATGGGAGGCTCTCTGTCCAACGATGCACTAGAATATGCCGTAAAAGTGGCTGATGTGACTAAAAACCAGACTCCGTTCTCCTCTGACActcctccagttcaattttaa

Function

GO:

id name namespace
GO:0055070 copper ion homeostasis biological_process
GO:0005507 copper ion binding molecular_function

KEGG:

id description
K06201 cutC; copper homeostasis protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133390 lncRNA upstream 100181 2075552 ~ 2075828 (+) True G90094
TU133376 lncRNA upstream 122163 2053597 ~ 2053846 (+) True G90089
TU133375 lncRNA upstream 123704 2052035 ~ 2052305 (+) True G90088
TU133308 lncRNA upstream 140172 2035337 ~ 2035837 (+) True G90041
TU133297 lncRNA upstream 141442 2017183 ~ 2034567 (+) True G90034
XR_006252343.1 lncRNA downstream 58113 2238942 ~ 2240047 (+) True LOC122356498
TU133438 lncRNA downstream 83917 2264746 ~ 2284358 (+) False LOC122356772
TU133534 lncRNA downstream 104696 2285525 ~ 2286244 (+) True G90206
XR_006252340.1 lncRNA downstream 122656 2303485 ~ 2304076 (+) True LOC122356495
XR_006252325.1 lncRNA downstream 129052 2309881 ~ 2311135 (+) True LOC122356488
XM_043255219.1 mRNA upstream 576 2166620 ~ 2175433 (+) True LOC122356476
XM_043255140.1 mRNA upstream 9981 2153424 ~ 2166028 (+) False tp53bp2a
XM_043255139.1 mRNA upstream 9981 2153426 ~ 2166028 (+) False tp53bp2a
XM_043255112.1 mRNA upstream 81981 2076173 ~ 2094028 (+) True wu:fc17b08
XM_043255193.1 mRNA downstream 5429 2186258 ~ 2195187 (+) True LOC122356458
XM_043255194.1 mRNA downstream 5521 2186350 ~ 2195187 (+) False LOC122356458
XM_043255116.1 mRNA downstream 19155 2199984 ~ 2217020 (+) False abcc2
XM_043255115.1 mRNA downstream 19205 2200034 ~ 2217020 (+) True abcc2
XM_043255200.1 mRNA downstream 37042 2217871 ~ 2224453 (+) True LOC122356461
XR_006252324.1 other upstream 9981 2153422 ~ 2166028 (+) True tp53bp2a
TU133255 other upstream 303418 1872184 ~ 1872591 (+) True G90010
TU133244 other upstream 333901 1840335 ~ 1842108 (+) False mpc1
TU133118 other upstream 573318 1581358 ~ 1602691 (+) False LOC122356486
TU132991 other upstream 705874 1469405 ~ 1470135 (+) True G89846
TU133574 other downstream 289116 2469945 ~ 2470381 (+) True G90230
TU133786 other downstream 801730 2982559 ~ 2984609 (+) False LOC122356072
TU133784 other downstream 801914 2982743 ~ 2984609 (+) False LOC122356072
TU133808 other downstream 871153 3051982 ~ 3055118 (+) False LOC122356070
TU133807 other downstream 872745 3053574 ~ 3055118 (+) False LOC122356070

Expression Profile