RNA id: XM_043255825.1


Basic Information

Item Value
RNA id XM_043255825.1
length 1078
RNA type mRNA
GC content 0.55
exon number 7
gene id LOC122356772
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 2264746 ~ 2284807 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGGACAGCGAAACACCAAAGTGAGTCCGATGACTGTTGGAGAGGTGTACGATCAACATCTTAGTACACCCCCAAAACCCAGCACCAACACGGAGGTTCAACATCCCCCTCCCCGCGATGAGACCCCTGTTGACTACATCTTCAGCCGCTACGCCATTGGTGATCAGCTGGGGAAAGGCGGTTTTGGCGTGGTGTATGAAGGGAGACGTTTGGATGACGATCTTAAAGTGGCTGTGAAATATGTCACAAAGACTCAGCACATGGAGTGTATTATCATCCCCGATCATCCAAACCCTCTTCCGAAAGAGATCGCCCTCACCATCCTGGCCAACAAAGGTCACAGAGTGCCGGAGATAATCAGGCTGCTGGACTGGACGGACCACCCTGACCACTTCGTCCTGGTCCTGGAATGTCCCTCTCCCTGCGAGAACCTGGTAGAGTTCATGAGGCGTCATGGTGGAAGAATCGATGAAGAAACGACGCGCCAGATCATGTGGCAGGCGACTTACGCTGCACACAAGTGCTGCCTCCGCAGAGTCTTCCACCGTGACGTCAAACTGGAGAACCTACTGATCAACATCGAGACATCCGAAGTCAAGCTGATTGACTTCGGATGCGGGGACATTCTGGGGACTTCACCCTACAAGTCCTACCACGGCACAGCAAAGTACTCCCCTCCAGAGTACCACCGCAGGGGAGAGTACCACGGCTGGCCAGCGACGGTCTGGTCACTAGGGGTCGTGATGTTCGCACTGTTGTGTGGACACTTCCCTAGCGACCATGACCTGTTGCTGCTGCAGAAGAAGCGCTGGTCCAAACCTGGCCTGTCAAAAGAATGCTGTGACCTCCTCGGGGCTCTCCTCCAAGAAAAGCCCATCCGGAGACTTGGTTTGGGGCAAATCGTGTTCCACAGCTGGTTTATGgcCCTCTTGTAGGACCGCTCCAGTTGGTGCTCTTCATCCCTCCTCTCGCCTTTGCGTCTTGCGGGGCGAGCAGGCCTCGTGTAGCGTCTTGCGCCCCGGCTTGAGGAAGCAGTATTTGCGTCTGGCGGTACTGCTTCCGGAGGGATgtgtacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252343.1 lncRNA upstream 42715 2238942 ~ 2240047 (+) True LOC122356498
TU133390 lncRNA upstream 206934 2075552 ~ 2075828 (+) True G90094
TU133376 lncRNA upstream 228916 2053597 ~ 2053846 (+) True G90089
TU133375 lncRNA upstream 230457 2052035 ~ 2052305 (+) True G90088
TU133308 lncRNA upstream 246925 2035337 ~ 2035837 (+) True G90041
TU133534 lncRNA downstream 718 2285525 ~ 2286244 (+) True G90206
XR_006252340.1 lncRNA downstream 18678 2303485 ~ 2304076 (+) True LOC122356495
XR_006252325.1 lncRNA downstream 25074 2309881 ~ 2311135 (+) True LOC122356488
XR_006252326.1 lncRNA downstream 25074 2309881 ~ 2311135 (+) False LOC122356488
TU133538 lncRNA downstream 25264 2310071 ~ 2311125 (+) False LOC122356488
XM_043255200.1 mRNA upstream 58309 2217871 ~ 2224453 (+) True LOC122356461
XM_043255201.1 mRNA upstream 58309 2217888 ~ 2224453 (+) False LOC122356461
XM_043255116.1 mRNA upstream 65742 2199984 ~ 2217020 (+) False abcc2
XM_043255115.1 mRNA upstream 65742 2200034 ~ 2217020 (+) True abcc2
XM_043255193.1 mRNA upstream 87575 2186258 ~ 2195187 (+) True LOC122356458
XM_043255121.1 mRNA downstream 29699 2314506 ~ 2424731 (+) False nrxn1b
XM_043255118.1 mRNA downstream 29702 2314509 ~ 2424731 (+) True nrxn1b
XM_043255120.1 mRNA downstream 29702 2314509 ~ 2424731 (+) False nrxn1b
XM_043255119.1 mRNA downstream 29703 2314510 ~ 2424731 (+) False nrxn1b
XM_043255122.1 mRNA downstream 29704 2314511 ~ 2424731 (+) False nrxn1b
TU133396 other upstream 102023 2176153 ~ 2180739 (+) False cutc
XR_006252324.1 other upstream 116734 2153422 ~ 2166028 (+) True tp53bp2a
TU133255 other upstream 410171 1872184 ~ 1872591 (+) True G90010
TU133244 other upstream 440654 1840335 ~ 1842108 (+) False mpc1
TU133118 other upstream 680071 1581358 ~ 1602691 (+) False LOC122356486
TU133574 other downstream 185138 2469945 ~ 2470381 (+) True G90230
TU133786 other downstream 697752 2982559 ~ 2984609 (+) False LOC122356072
TU133784 other downstream 697936 2982743 ~ 2984609 (+) False LOC122356072
TU133808 other downstream 767175 3051982 ~ 3055118 (+) False LOC122356070
TU133807 other downstream 768767 3053574 ~ 3055118 (+) False LOC122356070

Expression Profile