RNA id: TU133536


Basic Information

Item Value
RNA id TU133536
length 333
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id G90208
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 2287383 ~ 2298224 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAGTTAACTTAACCTCAGAACGGGAACAATAACTACCTGAAGACACCCTGTAATGAGAGATCACCCTCACAATGAGAGTCTAATCTATCTCAACTGGCTTCAGTTACCTTGGTAAAAGACGTTATATAACAAACATggacttttaccacggtaacgTCAGTCTAAGATACGTTAAAGCAGTGAAGACACCAGTTCTAGTTCCTCCTGCCACATCAGACTCTGCTGTATATATGGAGACCCTTCATGTTGTGTGCTTTTCATTATTGTGCATGCAGTTATAATTCAGGCATACGCTAAGCAGAAGTTTCAGGACCGTTCAAAGGATTAGGCGT

Function

GO:

id name namespace
GO:0046982 protein heterodimerization activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
ko05203 Viral carcinogenesis
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133535 lncRNA downstream 1174 2285542 ~ 2286209 (-) True G90207
TU133529 lncRNA downstream 3037 2239768 ~ 2284346 (-) True G90201
XR_006252345.1 lncRNA downstream 7237 2265878 ~ 2280146 (-) True LOC122356500
TU133523 lncRNA downstream 68949 2217890 ~ 2218434 (-) True G90196
TU133513 lncRNA downstream 72082 2214537 ~ 2215301 (-) False G90193
TU133539 lncRNA upstream 5990 2304214 ~ 2311129 (-) True G90211
TU133608 lncRNA upstream 129237 2427461 ~ 2427901 (-) True G90261
XR_006252342.1 lncRNA upstream 144023 2442247 ~ 2443484 (-) True LOC122356497
TU133632 lncRNA upstream 183146 2481370 ~ 2481642 (-) True G90271
XR_006252293.1 lncRNA upstream 202311 2500535 ~ 2502458 (-) True LOC122356206
XM_043255117.1 mRNA downstream 140787 2093475 ~ 2146596 (-) True slit1a
XM_043255160.1 mRNA downstream 212605 2060300 ~ 2074778 (-) True nvl
XM_043255159.1 mRNA downstream 212609 2060301 ~ 2074774 (-) False nvl
XM_043255107.1 mRNA downstream 250304 2012695 ~ 2037079 (-) False heatr5b
XM_043255230.1 mRNA upstream 140982 2439206 ~ 2457063 (-) True LOC122356487
XM_043255138.1 mRNA upstream 160656 2458880 ~ 2466266 (-) False LOC122356433
XM_043255137.1 mRNA upstream 160656 2458880 ~ 2466266 (-) True LOC122356433
XM_043256325.1 mRNA upstream 180359 2478583 ~ 2480329 (-) True gsta.1
XM_043255829.1 mRNA upstream 190203 2488427 ~ 2497421 (-) True LOC122356775
TU133469 other downstream 42305 2151837 ~ 2245078 (-) True G90161
TU133318 other downstream 595448 1684449 ~ 1691935 (-) True LOC122356758
TU133116 other downstream 730380 1556169 ~ 1557003 (-) False LOC122356439
TU132509 other downstream 2110063 123194 ~ 177320 (-) True G89543
TU132495 other downstream 2219507 67327 ~ 67876 (-) True G89537
TU133689 other upstream 285972 2584196 ~ 2585331 (-) True G90304
TU133704 other upstream 328104 2626328 ~ 2627157 (-) True G90311
TU133931 other upstream 692194 2990418 ~ 3021862 (-) True G90445
XR_006252267.1 other upstream 2374742 4672966 ~ 4689168 (-) False LOC122356061
XR_006252269.1 other upstream 2374742 4672966 ~ 4689168 (-) False LOC122356061

Expression Profile