RNA id: XR_006252326.1


Basic Information

Item Value
RNA id XR_006252326.1
length 693
lncRNA type inter_gene
GC content 0.44
exon number 4
gene id LOC122356488
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 2309881 ~ 2311135 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGGCCTGTATGCATTAGTGAAACTCAGTTAAATGGTCCGGTTACTCCTCTTATGATGGGGCTGTCCAATAATAACCCCACCGTAGTGTTTCGCCCATGGTTGTAGGGGGGCTAATGTAATCGACGGGACGGCGATTTAAATTGAAGGGGGTAGATTGTAATGGGATATGGGTTGGGCACTACAAGTCCCAGCAGTCCCAGGGCTCTTAAAAGGAAGTAGTAAGGTTGTGTTTGTTCCTTTTACTTCCgtcttttgattttggggaAAGGTGGCGTGGAAGGTAGAGTGGCATGTAGatgttacTTTGGGGATATGAGCGCAGATAATCATTGCCGCCAAATACCGCGGGAGCGTTGCTGAGAACTGAGAATATGATGTACCGACTAATAtggtgTGACTGGATTATTGCCTGACTGTGGCCTGACCATCTTGTCGAAATAGTGGATGTGAAAGGTTTGCAGTGTGATTGCTGTGAGCTTGGCTGCTGTGAGAACACTTTGGCTTCTAGGCCCTTCTTTCACTTTCTTAGGCAACCTGCGGCCACCTAGGgccagttttcttttatttctttttctttattttgtgggcatttacatccaaaagggtatgtgatatgttttaatatgtttgacttgtctttaataaaaatgtatttgattcttTAAAGTCACCTCATGGCCCCTTCTTTTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252340.1 lncRNA upstream 5805 2303485 ~ 2304076 (+) True LOC122356495
TU133534 lncRNA upstream 23637 2285525 ~ 2286244 (+) True G90206
TU133438 lncRNA upstream 25523 2264746 ~ 2284358 (+) False LOC122356772
XR_006252343.1 lncRNA upstream 69834 2238942 ~ 2240047 (+) True LOC122356498
TU133390 lncRNA upstream 234053 2075552 ~ 2075828 (+) True G90094
TU133549 lncRNA downstream 11474 2322609 ~ 2322964 (+) True G90214
TU133558 lncRNA downstream 125971 2437106 ~ 2437509 (+) True G90220
TU133576 lncRNA downstream 170234 2481369 ~ 2481644 (+) False G90232
TU133578 lncRNA downstream 170234 2481369 ~ 2481775 (+) True G90232
TU133666 lncRNA downstream 313803 2624938 ~ 2625283 (+) True G90290
XM_043255825.1 mRNA upstream 25074 2282762 ~ 2284807 (+) True LOC122356772
XM_043255200.1 mRNA upstream 85428 2217871 ~ 2224453 (+) True LOC122356461
XM_043255201.1 mRNA upstream 85428 2217888 ~ 2224453 (+) False LOC122356461
XM_043255116.1 mRNA upstream 92861 2199984 ~ 2217020 (+) False abcc2
XM_043255121.1 mRNA downstream 3371 2314506 ~ 2424731 (+) False nrxn1b
XM_043255118.1 mRNA downstream 3374 2314509 ~ 2424731 (+) True nrxn1b
XM_043255120.1 mRNA downstream 3374 2314509 ~ 2424731 (+) False nrxn1b
XM_043255119.1 mRNA downstream 3375 2314510 ~ 2424731 (+) False nrxn1b
XM_043255122.1 mRNA downstream 3376 2314511 ~ 2424731 (+) False nrxn1b
TU133396 other upstream 129142 2176153 ~ 2180739 (+) False cutc
XR_006252324.1 other upstream 143853 2153422 ~ 2166028 (+) True tp53bp2a
TU133255 other upstream 437290 1872184 ~ 1872591 (+) True G90010
TU133244 other upstream 467773 1840335 ~ 1842108 (+) False mpc1
TU133118 other upstream 707190 1581358 ~ 1602691 (+) False LOC122356486
TU133574 other downstream 158810 2469945 ~ 2470381 (+) True G90230
TU133786 other downstream 671424 2982559 ~ 2984609 (+) False LOC122356072
TU133784 other downstream 671608 2982743 ~ 2984609 (+) False LOC122356072
TU133808 other downstream 740847 3051982 ~ 3055118 (+) False LOC122356070
TU133807 other downstream 742439 3053574 ~ 3055118 (+) False LOC122356070

Expression Profile