RNA id: TU133683


Basic Information

Item Value
RNA id TU133683
length 1662
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G90300
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 2621236 ~ 2623909 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGATCAGAGTTTTCTCGCTGCTGTGCTCTCGTTCGATACGACGCCGTGAAGATGACCTCGACAGCCTGGCCATCATCAAGAGCCTGAACGCCGCAGGAAGTCACCAGGAGGCGTGGTCTCCAGCTTTGACCTGTCTTCAACTGTCAGCCAGTAAGTTCAGCGACGTTCCCTCAACCTCGTCCGGAGGAATAGCCAGCTTTCTGTCCAGTGACGCTCCTTCGACGCAATCGCGTCTAGCCTCGACACAAACCCCCAAAACACAGCCGAGCCCCAAGCGCCCGGGGGCCATCCAGTCTCTGTTTGAGAAGGCGGCTGAGAAGAAGAAAGCGCCTGGGTCATCCGGTCTCCCTCAGAGAGCTCCTGGCATCTCCTCCTTCTTCCACAGAAAAGGTGAGGAGAAGTCGCTCCAGCTGACGGAGTCGCTCGGAGCGGACGAGGGCGATCTTCAGCCGTGTCAGCGCTGTGGACTGAAGGTGCTGGTCTGGGAAATGCCTGAGCACATGGACTATCACTTCGCTCTGGACCTGCAGGAGTCGTTCTCCTCGGCGTCCAGCGGGAAGAGCCAGGCCCCGACCGAGTGGCCCGCAGGCCAAGAGAGCGCGAGTGCAGGCAAACCGCGCACGCTGGACTCCTTCTTCAGAAAGACGTGAGCGCAGCCCCGGCCAGCTCTTCACAGCATTTGTGCCTTTTCGAAAACTTTtacggttttatttttatataataaatacgtTGCTCGAGGGAATGCCGTTCAAaagcagttttcttttcttgtatAGAGGCCTTGATCTACTGAACACATGAAAGTAACACAAAAACAGTCACGTGggctaggtttttttttaattgagaagCGGTCCGTTGATGCATAGTTTGTTAGGATATGACTATATTTGGAAACCGAGCGtgcaaaaaaattgaaatattgagaaaatcgttttgaaagttgtccaaatgaagatCTTCAACACTAATTCAAAATTAGGTTTGAATGTATTGGTAAAAATTTACAATAAAGTTAtcgtttgttaacattagtcatGTTAGTTCATAAAATACTATCATTCGTTGTTAGGTCATGTTAGTTCAGTGCATTAACTAGTTACCAAACAACTTGTGATTGACCACAATTAACAAAAAGCTGTAGAAGTCCAGTTCATTCTTAGCTCACGTTAACTCATGTCAAGtgatgttaactaatgaaccttattgtaaagttttatcAAATGTACGtgtggtaggaaatgtacaaaataactTTGTGGAACGTATTCTTTACTCGGTCATCTGAAATGTCGTTGTCTGCCTGCTCCACATGGATATTGTAGAAATTAGCAAGAGTATAGTGCCCTGTAATCGTGATATTCTGTCAGAATTTGTTACATCCCATTAAAACAGTAGttgcaatgaaaaaaagaaactgttatATGCTGTTGTGGTTAGAACAGCTAGGAACAAGCATTGAACACACTTTTCTACCTGTTACAGTAATTGTTTAATGCTGGAAAAAGAATGCAATTCTAATATTGCGATAAAATCAGAGGGGCGTAATAAAACttgttttgcaaatgtttttgtgcagtaACCTTCACTGTCATTTTAACTGAACATcaaccttttattttaatgttataaatcAGTGATATTATTAAATCAGTGCCGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252293.1 lncRNA downstream 118778 2500535 ~ 2502458 (-) True LOC122356206
TU133632 lncRNA downstream 139594 2481370 ~ 2481642 (-) True G90271
XR_006252342.1 lncRNA downstream 177752 2442247 ~ 2443484 (-) True LOC122356497
TU133608 lncRNA downstream 193335 2427461 ~ 2427901 (-) True G90261
TU133539 lncRNA downstream 310107 2304214 ~ 2311129 (-) True G90211
TU133705 lncRNA upstream 995 2624904 ~ 2625273 (-) True G90312
TU133877 lncRNA upstream 273129 2897038 ~ 2897468 (-) True G90408
TU133906 lncRNA upstream 319801 2943710 ~ 3194742 (-) False G90431
TU133908 lncRNA upstream 319801 2943710 ~ 3194742 (-) True G90431
TU133910 lncRNA upstream 326389 2950298 ~ 3201099 (-) True G90432
XM_043254726.1 mRNA downstream 12368 2607080 ~ 2608868 (-) True LOC122356217
XM_043255829.1 mRNA downstream 123815 2488427 ~ 2497421 (-) True LOC122356775
XM_043256325.1 mRNA downstream 140907 2478583 ~ 2480329 (-) True gsta.1
XM_043255138.1 mRNA downstream 154970 2458880 ~ 2466266 (-) False LOC122356433
XM_043255137.1 mRNA downstream 154970 2458880 ~ 2466266 (-) True LOC122356433
XM_043254771.1 mRNA upstream 224264 2848173 ~ 2853384 (-) False si:zfos-1056e6.1
XM_043254770.1 mRNA upstream 224264 2848173 ~ 2852321 (-) True si:zfos-1056e6.1
XM_043254772.1 mRNA upstream 238099 2862008 ~ 2865825 (-) True LOC122356239
XM_043254768.1 mRNA upstream 267478 2891387 ~ 2913514 (-) True LOC122356237
XM_043254769.1 mRNA upstream 269798 2893707 ~ 2913516 (-) False LOC122356237
TU133689 other downstream 35905 2584196 ~ 2585331 (-) True G90304
TU133469 other downstream 376158 2151837 ~ 2245078 (-) True G90161
TU133318 other downstream 929301 1684449 ~ 1691935 (-) True LOC122356758
TU133116 other downstream 1064233 1556169 ~ 1557003 (-) False LOC122356439
TU132509 other downstream 2443916 123194 ~ 177320 (-) True G89543
TU133704 other upstream 2419 2626328 ~ 2627157 (-) True G90311
TU133931 other upstream 366509 2990418 ~ 3021862 (-) True G90445
XR_006252267.1 other upstream 2049057 4672966 ~ 4689168 (-) False LOC122356061
XR_006252269.1 other upstream 2049057 4672966 ~ 4689168 (-) False LOC122356061
XR_006252268.1 other upstream 2049057 4672966 ~ 4689168 (-) False LOC122356061

Expression Profile