RNA id: TU133813


Basic Information

Item Value
RNA id TU133813
length 275
RNA type TUCP
GC content 0.56
exon number 2
gene id G90349
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 3179427 ~ 3179933 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGAATAACAGCTCTCGGATACAGATGCTAAAAAACATTTGGATAAAAGAGCTCCACAGAAGAAACAGTTGTTGAATGGAAGTGGTGAGGGCCAGAGAGATGGGCCCCGAGAGAATCTTACCGAACCCCGAGGAGGATGCGCTGCAGGAGCGGCCCTCAGACACCGCGGCGCAGGAGGAGTGGAGCGGAGAGGACatagaggaggaggaggaggaggaggaaggaggCGCCGGAGACGAGGACAGTGCCGGTACTATTACCAGCCTCTCAATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252271.1 lncRNA upstream 158536 3020068 ~ 3020891 (+) True LOC122356074
TU133791 lncRNA upstream 162207 3016794 ~ 3017220 (+) True G90339
TU133785 lncRNA upstream 168786 2982743 ~ 3010641 (+) False LOC122356072
TU133713 lncRNA upstream 225174 2857325 ~ 2954253 (+) False G90319
XR_006252297.1 lncRNA upstream 297741 2865807 ~ 2881686 (+) True LOC122356240
TU133743 lncRNA downstream 19914 3199847 ~ 3201487 (+) True G90326
XR_006252296.1 lncRNA downstream 66330 3246263 ~ 3247132 (+) True LOC122356226
TU133829 lncRNA downstream 135730 3315663 ~ 3315908 (+) True G90365
TU133839 lncRNA downstream 222031 3401964 ~ 3403754 (+) True G90373
TU133844 lncRNA downstream 270240 3450173 ~ 3450485 (+) True G90378
XM_043254522.1 mRNA upstream 124129 3053506 ~ 3055298 (+) True LOC122356070
XM_043254519.1 mRNA upstream 128760 3022616 ~ 3050667 (+) True LOC122356067
XM_043254525.1 mRNA upstream 184639 2982703 ~ 2994788 (+) True LOC122356072
XM_043254845.1 mRNA upstream 200178 2971146 ~ 2979249 (+) True LOC122356304
XM_043255830.1 mRNA upstream 208280 2957658 ~ 2971147 (+) True LOC122356776
XM_043255841.1 mRNA downstream 27478 3207411 ~ 3209753 (+) True LOC122356782
XM_043255842.1 mRNA downstream 29859 3209792 ~ 3227749 (+) True LOC122356783
XM_043255847.1 mRNA downstream 49180 3229113 ~ 3231423 (+) True LOC122356787
XM_043255849.1 mRNA downstream 55110 3235043 ~ 3246109 (+) True znf318
XM_043255234.1 mRNA downstream 140496 3320429 ~ 3398358 (+) False tjap1
TU133808 other upstream 124309 3051982 ~ 3055118 (+) False LOC122356070
TU133807 other upstream 124309 3053574 ~ 3055118 (+) False LOC122356070
TU133786 other upstream 194818 2982559 ~ 2984609 (+) False LOC122356072
TU133784 other upstream 194818 2982743 ~ 2984609 (+) False LOC122356072
TU133574 other upstream 709046 2469945 ~ 2470381 (+) True G90230
TU133737 other downstream 7893 3187826 ~ 3189681 (+) False G90324
TU133738 other downstream 7893 3187826 ~ 3189681 (+) False G90324
TU133730 other downstream 10393 3190326 ~ 3192113 (+) True G90324
TU133820 other downstream 27843 3207776 ~ 3209732 (+) False LOC122356782
TU133796 other downstream 91392 3271325 ~ 3274372 (+) True G90343

Expression Profile