RNA id: XM_043255841.1


Basic Information

Item Value
RNA id XM_043255841.1
length 1040
RNA type mRNA
GC content 0.55
exon number 3
gene id LOC122356782
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 3207411 ~ 3209753 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCAGCGGACTTTTGCCAAACACAAGCTAGTTAGCGTCTAGCGAGCGGCTCACAACGCAGATCAGATGTATTACAGCAACTGTATTAAGCTACTGTTTGCGTCGATGCGACGTCAACTGTACTAACGTCTGCATGGTTGTGCGCGCGAACAAACGTGCTCGTGACACGGTTTGCTAACGTTAGCTGCTCACCGAGCAACTCGGTTGGGAAATGGGAAAAACCGCAAGAAAGGAAAGGGGGCAGCTCAAGCAGGACCAAAGGGCATGCGTCTCCCAGCGCCTCCTCAACCCAGACCTCCTCAACAAGGAGGCTTTCGCGGACCTGCTCCCGGTTTCCAGATGGGCCCCTGACACAGGTTTCCTGCGCCCCATCACGACTTCGGACAGCAGCCCCCCAGAATGAGGATGATGGACGACATGGAAAGAGATCGAGGGTTTATGCAAGAGCCGCAGGGATTCATGGTGAACGACGGGCCTTTTAACCGGATGGATTTCCCCGACAGGCACGAATGTCGCCCTCGCTTTGAGGGACCTGATCCAGCTTTCCGTCATCAAGAGTTTGGAAACAGACCGCCTGCACCAGCTTTACCGTTTTACCGTCCAGAGCTTGAGTATGAACCGCGTTTCCGTTCCCCGGAGTTTTGTGACAGACCTCGAGACTTCTGTCCGCCCGAGTTTAGGGGCAGACCCCCGAACTTCCGCCCTCCTGAGTTTGACGGGGGGCCAGGTTTCCACATGATGAACCCTGCTTTCGACCAAATGGAGCAGTTTGGTCCAAGAGACCAACATTATATGCCGCCAATGGACCCCCATGGCAATCATTCGTttggagagagaggagggttTGCTGCACCGCTGGCACCTGATTTCCGGGGCCCGGGGCCGGTACAGCCACCATCTGAGGCGTTCAGTAGCGCGCCTCGTCCCGCCTGTTCACCCCAACCTCCACAGAAAAAAGATCAGCTGGCTCCGAAAGAGACTGAACCGCCTAAATCGATGGCTTTAAAGATATCATCGTTCAAGAATATCTCTGCAAAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133714 lncRNA upstream 3392 2857325 ~ 3204019 (+) True G90319
TU133743 lncRNA upstream 5924 3199847 ~ 3201487 (+) True G90326
XR_006252271.1 lncRNA upstream 186520 3020068 ~ 3020891 (+) True LOC122356074
TU133791 lncRNA upstream 190191 3016794 ~ 3017220 (+) True G90339
TU133785 lncRNA upstream 196770 2982743 ~ 3010641 (+) False LOC122356072
XR_006252296.1 lncRNA downstream 36510 3246263 ~ 3247132 (+) True LOC122356226
TU133829 lncRNA downstream 105910 3315663 ~ 3315908 (+) True G90365
TU133839 lncRNA downstream 192211 3401964 ~ 3403754 (+) True G90373
TU133844 lncRNA downstream 240420 3450173 ~ 3450485 (+) True G90378
TU133848 lncRNA downstream 259694 3469447 ~ 3489791 (+) True G90381
XM_043254522.1 mRNA upstream 152113 3053506 ~ 3055298 (+) True LOC122356070
XM_043254519.1 mRNA upstream 156744 3022616 ~ 3050667 (+) True LOC122356067
XM_043254525.1 mRNA upstream 212623 2982703 ~ 2994788 (+) True LOC122356072
XM_043254845.1 mRNA upstream 228162 2971146 ~ 2979249 (+) True LOC122356304
XM_043255830.1 mRNA upstream 236264 2957658 ~ 2971147 (+) True LOC122356776
XM_043255842.1 mRNA downstream 39 3209792 ~ 3227749 (+) True LOC122356783
XM_043255847.1 mRNA downstream 19360 3229113 ~ 3231423 (+) True LOC122356787
XM_043255849.1 mRNA downstream 25290 3235043 ~ 3246109 (+) True znf318
XM_043255234.1 mRNA downstream 110676 3320429 ~ 3398358 (+) False tjap1
XM_043255237.1 mRNA downstream 110677 3320430 ~ 3398358 (+) False tjap1
TU133730 other upstream 15298 3190326 ~ 3192113 (+) True G90324
TU133737 other upstream 17730 3187826 ~ 3189681 (+) False G90324
TU133738 other upstream 17730 3187826 ~ 3189681 (+) False G90324
TU133813 other upstream 27478 3179427 ~ 3179933 (+) True G90349
TU133808 other upstream 152293 3051982 ~ 3055118 (+) False LOC122356070
TU133796 other downstream 61572 3271325 ~ 3274372 (+) True G90343
TU133812 other downstream 68084 3277837 ~ 3280997 (+) False G90348
TU133811 other downstream 69449 3279202 ~ 3280997 (+) True G90348
TU133843 other downstream 239648 3449401 ~ 3450017 (+) True G90377
XR_006252394.1 other downstream 410653 3620406 ~ 3713763 (+) False prkn

Expression Profile