RNA id: TU133906


Basic Information

Item Value
RNA id TU133906
length 1297
lncRNA type read_through
GC content 0.44
exon number 2
gene id G90431
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 2943710 ~ 3194742 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaacaaaaatgagtttaATGTAGCCTTTTATTCCTATATAAACGTCGATTAACGCATATATATGGTAAACGGAAgcttaaaattagtttttgtgaGTTGCAACTAACCGTATGTGATGTGCtctatgtatgtaaataaaatacaaaattaaataagtttGTGTCTCTTCTGAAGACTTGAATTAAACCATTCGATTCATAGAAATGACTTTTACAATGTCtgaaattatgtattaaaattgtGGTTGAATAGCCTTTCAATGTATGAAGAAAAGGATGGGAcggaaacaaaatatattaaaaaaacctttcatttgCATTCTGAAGATAAACGCAAAAGTGGGTTTGGAACTACACTAAACAACACTTTTCATTCACGGGTGAATTAACCCTTGCACTACAGCACAGACAGGAACTGCGCAGCCCTCATTTAATAACAGGACTGAATTTCAGTCCACCGATGACCACAAACTTAATGCTATTTACAAGTCTTGCAACATAAGAAAAAGAGCATCTCATAAGGCTGATGCCAATATTCATTCTGACCAGCTCCGCCCTCGAGTAGGTCACAGTTAGTGCGACTGCAGAcgttaaaccaaaaaaaactaaacacttCCTGTGCCAGTGAAAATGCGTTTGCCAAACACAGACtgaaacctagtgagctgcttATCTGTCTTCAGAGACGAAATATTTGGGCTGCTCTACATGAGCAGAACTCTACATATCCCAGAGAGTTTGATGTTAGCCCACATGGTATACTGATGCTGCGTATCTTTCATAATAGCGCCAGGAGCCCGTCTAGATAGGAAACTCACTAAGTTTTAAAACAGAGCCGCGCACACAGGAAATATAAAGAGATTTAAACAAAGAGAAAGGCAAGCTGATCACCCCAGTAAGCGCACCGGTTCAGTAacagtgcagaaaaaaaaaaaaaaagccctgagAGGGGAGAAAAACGTCAGTGAAAGCCACGCTCTCTGCCTCCGTTCTTGCTCGAAGGGGGGTCCTAGGGATCAAGGGTTAAGGGTCATCAGCACACCTGGTGTCGGCCTTgccgccgccgctgctgctCGCTGAGCTTTTTTTCACGTCCATCTTAAAGGAGAACTGCGCCTGGCCCTTGCGGGGAGTGGACGGGTCCTCCATCAAGAACTCCACGATGTGCGGGCTTTCCTCGTTGCGGCGGAGGTAGCCTTTGTTGATGACGTGCATGATGCAGGAGAGCACGTCTGTAGTGCTGCAGCTGAAGCGGACCGAGGGGTGAGTCCGACTGCCCTCCTGCTTCTGACACCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133877 lncRNA downstream 46242 2897038 ~ 2897468 (-) True G90408
TU133705 lncRNA downstream 318437 2624904 ~ 2625273 (-) True G90312
TU133683 lncRNA downstream 319801 2621236 ~ 2623909 (-) True G90300
XR_006252293.1 lncRNA downstream 441252 2500535 ~ 2502458 (-) True LOC122356206
TU133632 lncRNA downstream 462068 2481370 ~ 2481642 (-) True G90271
TU133949 lncRNA upstream 88437 3283179 ~ 3285406 (-) False dlk2
TU133983 lncRNA upstream 175423 3370165 ~ 3401066 (-) True G90482
TU134012 lncRNA upstream 228011 3422753 ~ 3433474 (-) True timm23b
TU134019 lncRNA upstream 255682 3450424 ~ 3450733 (-) True G90504
TU134020 lncRNA upstream 256252 3450994 ~ 3451413 (-) True G90505
XM_043254769.1 mRNA downstream 30194 2893707 ~ 2913516 (-) False LOC122356237
XM_043254768.1 mRNA downstream 30196 2891387 ~ 2913514 (-) True LOC122356237
XM_043254772.1 mRNA downstream 77885 2862008 ~ 2865825 (-) True LOC122356239
XM_043254771.1 mRNA downstream 90326 2848173 ~ 2853384 (-) False si:zfos-1056e6.1
XM_043254770.1 mRNA downstream 91389 2848173 ~ 2852321 (-) True si:zfos-1056e6.1
XM_043255950.1 mRNA upstream 81426 3276168 ~ 3278381 (-) True mea1
XM_043255951.1 mRNA upstream 86595 3281337 ~ 3298549 (-) True dlk2
XM_043254626.1 mRNA upstream 207195 3401937 ~ 3409645 (-) False lrrc73
XM_043254624.1 mRNA upstream 207195 3401937 ~ 3409641 (-) True lrrc73
XM_043254625.1 mRNA upstream 207195 3401937 ~ 3409638 (-) False lrrc73
TU133704 other downstream 316553 2626328 ~ 2627157 (-) True G90311
TU133689 other downstream 358379 2584196 ~ 2585331 (-) True G90304
TU133469 other downstream 698632 2151837 ~ 2245078 (-) True G90161
TU133318 other downstream 1251775 1684449 ~ 1691935 (-) True LOC122356758
TU133116 other downstream 1386707 1556169 ~ 1557003 (-) False LOC122356439
XR_006252267.1 other upstream 1478224 4672966 ~ 4689168 (-) False LOC122356061
XR_006252269.1 other upstream 1478224 4672966 ~ 4689168 (-) False LOC122356061
XR_006252268.1 other upstream 1478224 4672966 ~ 4689168 (-) False LOC122356061
XR_006252266.1 other upstream 1478224 4672966 ~ 4689168 (-) False LOC122356061
XR_006252265.1 other upstream 1478224 4672966 ~ 4689168 (-) False LOC122356061

Expression Profile