RNA id: TU133957


Basic Information

Item Value
RNA id TU133957
length 407
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G90459
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 3191991 ~ 3193302 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTAATGAGTAATCTGGtgattattttgatgattaATAAGCAAACACCCCATGCAAAACAATCCATACTTTACCATAAACACTAAATTGTCTATATGCATCTCCTTCTCATTCTTCATGATCTGCACAATGAGACAGTAGATGTagttcctcttcctctctaGCGTGAGCGCAGCATCTTCATCCACATTCAGGTAGGTCTGCTTGGGAAGCAGGAAATGGTAACCGTGTCGTTCTGAGCTCTGTGAGAGCGCGTCTTCTTGTTCAGTCTCAGGACccCTTTCATGGGGTCCTGGCTGGAGCCGGTGTGAGTGAGAACCCCTTTCTCTGCAGTGAGAGGTTTGAGGGCATGGCTCATCATGGCTGGAGAGAGACCCGTGGCCTGCTGCAGCATCTCCACGTTCACGTC

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG:

id description
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport
ko03030 DNA replication
ko03430 Mismatch repair

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133952 lncRNA downstream 13431 3176618 ~ 3178560 (-) True G90454
TU133922 lncRNA downstream 178255 2985936 ~ 3013736 (-) True G90441
TU133916 lncRNA downstream 214295 2974996 ~ 2977696 (-) True G90437
TU133877 lncRNA downstream 294523 2897038 ~ 2897468 (-) True G90408
TU133705 lncRNA downstream 566718 2624904 ~ 2625273 (-) True G90312
TU133949 lncRNA upstream 89877 3283179 ~ 3285406 (-) False dlk2
TU133983 lncRNA upstream 176863 3370165 ~ 3401066 (-) True G90482
TU134012 lncRNA upstream 229451 3422753 ~ 3433474 (-) True timm23b
TU134019 lncRNA upstream 257122 3450424 ~ 3450733 (-) True G90504
TU134020 lncRNA upstream 257692 3450994 ~ 3451413 (-) True G90505
XM_043254520.1 mRNA downstream 119597 3056748 ~ 3072394 (-) True LOC122356068
XM_043254523.1 mRNA downstream 139163 3050548 ~ 3052828 (-) True LOC122356071
XM_043254524.1 mRNA downstream 139203 3050548 ~ 3052788 (-) False LOC122356071
XM_043256387.1 mRNA downstream 236539 2953239 ~ 2955452 (-) True tuba4l
XM_043254769.1 mRNA downstream 278475 2893707 ~ 2913516 (-) False LOC122356237
XM_043255950.1 mRNA upstream 82866 3276168 ~ 3278381 (-) True mea1
XM_043255951.1 mRNA upstream 88035 3281337 ~ 3298549 (-) True dlk2
XM_043254626.1 mRNA upstream 208635 3401937 ~ 3409645 (-) False lrrc73
XM_043254624.1 mRNA upstream 208635 3401937 ~ 3409641 (-) True lrrc73
XM_043254625.1 mRNA upstream 208635 3401937 ~ 3409638 (-) False lrrc73
TU133931 other downstream 170129 2990418 ~ 3021862 (-) True G90445
TU133704 other downstream 564834 2626328 ~ 2627157 (-) True G90311
TU133689 other downstream 606660 2584196 ~ 2585331 (-) True G90304
TU133469 other downstream 946913 2151837 ~ 2245078 (-) True G90161
TU133318 other downstream 1500056 1684449 ~ 1691935 (-) True LOC122356758
XR_006252267.1 other upstream 1479664 4672966 ~ 4689168 (-) False LOC122356061
XR_006252269.1 other upstream 1479664 4672966 ~ 4689168 (-) False LOC122356061
XR_006252268.1 other upstream 1479664 4672966 ~ 4689168 (-) False LOC122356061
XR_006252266.1 other upstream 1479664 4672966 ~ 4689168 (-) False LOC122356061
XR_006252265.1 other upstream 1479664 4672966 ~ 4689168 (-) False LOC122356061

Expression Profile