RNA id: TU134057


Basic Information

Item Value
RNA id TU134057
length 923
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G90535
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 3713924 ~ 3714846 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTGCCCATATTTATCTGCTGAGTTCGGGTCAGCTCCGTTCGTGAGGACGTCATTCAAAAACTGCAGGTCCACCTGAAAACAAAAGTCGGTATCGCTGCGTGACGCACCGTGTCCTCCCGAAGCTCAGTGGAGCCACGTggttatttttgtgcattacCTCATCTGTGTCTTTATTGCTGTCCGCCAGATCTCGAAAGTGATCCAGAAGCCTTCGATTCAGCTGGATCTCCGTCTTCTTCTGTCCATCTACCGTGTCTTCATCCGTTGCAAGACCCTTGTATTTGCTCCCTACATATTCCTCTAAAAATACAACCATTTAGAGCTCGGACTGACTTTCACGTGTACCGCGTATCTCTATATAATCTTACGATAATCTATAACCAGCGATTATATTCTCGATGCCGAAGGCTGATAGACCATCTATAAACAATCTGCTAGCAATGGTATAATTTACTGTATAGTACAAGCAGACTGTCCTCAGTTAATTCTGCGGTCCTTGAGATTGCTTGCTCACATTTAAATAGTCTGCTGTAGTGTGAGAACGTAAGAACATGCACGGCCATTTGTGACTAGAATGTATGTAGCTTCTGGTGTTATTTGCTTCAGTTTTATTTAGCTATACAAACAACTATCTCTTGTGTTGCTTGATAATGCAAAAtggtgttgttattattatttttattattttaaatgcattattgtaaacatttaGCGTGCACATTCACAGGAAAACATCTTGCATGCACGTCGGAAAATAAGCTGGTTCTGCAGCTCTGTAAGTGTTCCTCTGAACCCCTCCacctccaccagctccacctgtctagatCTGCGACAGGATGGCTCTCAAACGAGCttctctttatttaattttatttctattctttCAAATTAGGTCAAAATACTGTCCCCTGATACCATCGG

Function

GO: NA

KEGG:

id description
ko04713 Circadian entrainment

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134055 lncRNA downstream 1385 3711396 ~ 3712539 (-) True G90533
XR_006252403.1 lncRNA downstream 135188 3568616 ~ 3578736 (-) True LOC122356977
TU134020 lncRNA downstream 262511 3450994 ~ 3451413 (-) True G90505
TU134019 lncRNA downstream 263191 3450424 ~ 3450733 (-) True G90504
TU134012 lncRNA downstream 280450 3422753 ~ 3433474 (-) True timm23b
TU134165 lncRNA upstream 214433 3929279 ~ 3930527 (-) True G90622
TU134166 lncRNA upstream 215970 3930816 ~ 3931096 (-) True G90623
TU134167 lncRNA upstream 216858 3931704 ~ 3932834 (-) True G90624
TU134168 lncRNA upstream 218709 3933555 ~ 3933766 (-) True G90625
TU134169 lncRNA upstream 219367 3934213 ~ 3934450 (-) True G90626
XM_043255850.1 mRNA downstream 170248 3482958 ~ 3543676 (-) True qkib
XM_043255375.1 mRNA downstream 246867 3454742 ~ 3467057 (-) True LOC122356548
XM_043255508.1 mRNA downstream 278344 3426588 ~ 3435580 (-) False timm23b
XM_043256122.1 mRNA upstream 46987 3761833 ~ 3764601 (-) True prph2b
XM_043255556.1 mRNA upstream 237751 3952597 ~ 3955955 (-) False wu:fj16a03
XM_043254600.1 mRNA upstream 301187 4016033 ~ 4022400 (-) True LOC122356122
XM_043255866.1 mRNA upstream 337897 4052743 ~ 4055413 (-) True hcar1-3
XM_043256321.1 mRNA upstream 347626 4062472 ~ 4067606 (-) True haao
TU133931 other downstream 692062 2990418 ~ 3021862 (-) True G90445
TU133704 other downstream 1086767 2626328 ~ 2627157 (-) True G90311
TU133689 other downstream 1128593 2584196 ~ 2585331 (-) True G90304
TU133469 other downstream 1468846 2151837 ~ 2245078 (-) True G90161
TU133318 other downstream 2021989 1684449 ~ 1691935 (-) True LOC122356758
XR_006252267.1 other upstream 958120 4672966 ~ 4689168 (-) False LOC122356061
XR_006252269.1 other upstream 958120 4672966 ~ 4689168 (-) False LOC122356061
XR_006252268.1 other upstream 958120 4672966 ~ 4689168 (-) False LOC122356061
XR_006252266.1 other upstream 958120 4672966 ~ 4689168 (-) False LOC122356061
XR_006252265.1 other upstream 958120 4672966 ~ 4689168 (-) False LOC122356061

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU102037 True 207 lncRNA 0.41 1 CI01000015 4054473 ~ 4054679 (+)