RNA id: TU134239


Basic Information

Item Value
RNA id TU134239
length 1551
RNA type TUCP
GC content 0.58
exon number 2
gene id G90660
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 4182499 ~ 4353931 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgagagagagagagagagagagagagagagagagagagagagagagagagagcttcaAACTGCACGAACCAATCGAAACCACTGGGTGGCGTCGCGAGACTGGATCAAACTTTTGGAATGGATGCGCATACTTTGAAAACTAGTATACTTTTCGTCAAGGCATATTCTTGGCAAGGATGAAGGAAAATCTGAAACCGCTCTGTCTTTCGCGTTCACGAGtcttttgtacaaaaaaaaaatctggaaagtAGGTGGTCCAAAAAGACCAAGAGAATGCACCAAACTGCACCGGTGGAATGCCTTCAAACAGACTAATGCCATGTCGAGCGTCtgacaaaaacaaatccatctcCCTcgatattcaaaaaaaaaaaaaagtctattgcTCGACTACATATCTAACGGGAGACTCCTCCGCTACCGAGTCCACTACAACGAGAAAAGTTCCGCTCAATCGTCGGAAATCGACAGCCTGCTGAAGATCGGCAAACGCCTCCCGCCGTCCAGGCTGGGAGACTCGGAGCCGCTGAGACTTCCGGTGGAGCTGCGCGAGCCGCTGGCGTAGCTGTCCCGGTCGGAGATGCTGTCGGGCGGGCTGGGGGGCGAGTCGAACACCGGCGACTCTGACAGGCGCTGGAGGGACTGCGTGTGGCCGAGGCCGTCGCCCATGTTGACCTGAAGGTTTGCGTAATAACCGTTCTGCGTGTGCACGGCCAGCGGCGCGAGCAGGGCTTTGAGGTCTTGGCCGGTGAAGGAGAAGGCACTGTTTCCGAGGCACCGGGCGTCTTCGTAGAAGCTCGCGGCGCTGGAGGGAGGCGGGGTGCGCGACGTGGGGCTCTCGAGAAGGGGCGAGTCGAGTccgtggtggtggtggtggctGGAGAAACCGGAGAAGCTGAGGCTGTGGTGGAGTTTCGGTcggtgctgctgctgctgctgctgttgctgtccGTAGCCGCTCACCGACTCGCACCGAGCGGGCTTGGCGGACTCCCCCTGCACGCTGTTGGCGTTGCTCGGCGCCGGTCTGCGCTCGTCGGCGTTGTGGATGAAATGGCACCGCGGGCCGTACGGGCAGAAGCCGATGGTGTGGAAAGTGCGACAGGGCTCGGTTTTGTACTTGGGGTGGCGAGACAGGCTTCTCAGCTCGTGGTAGCCGTGCGCAAACTGGCACTTCTCGCCGTATTTGCAAGCGCCGTTTTCCTCGAAGGGCCTGCAGAGCTCCGTCTTGTAGCGGGTGGAGTTGATCTGCGAGCCCGGCTTCTGCTGCAGCTGCTGGGCGCTCTCGCTGTAGGCGCGGTCGCGGAACTTGTTCTCCTTGTTCATGATGGCGTTCTCCttcatgctgctgctgctgctgctgtaggGGCTGGCGGGGTACTTGTTGCCGTTTGTCACGGACTCCATGTTGCTGGTAGAGTTTCGACGGAAGAATCCCGACGCGTACGAGTTGCAGTTGTTGGTGCCGCTGCCGCTGGAGGTTGTCACCGGGGCCCCGACTGCTTTCTTATCCAGCATGCTGTTGATGTGAATGGCGTTCATGTTGAGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134199 lncRNA upstream 39997 4137323 ~ 4142502 (+) True LOC122356176
XR_006252290.1 lncRNA upstream 40411 4137317 ~ 4142088 (+) False LOC122356176
TU134198 lncRNA upstream 77028 4105247 ~ 4105471 (+) True G90650
TU134192 lncRNA upstream 119720 4057260 ~ 4062779 (+) True G90646
TU134104 lncRNA upstream 132887 3952600 ~ 4049612 (+) False G90573
XR_006252408.1 lncRNA downstream 567 4244608 ~ 4245790 (+) True LOC122357002
TU134238 lncRNA downstream 108578 4352619 ~ 4353931 (+) False G90660
TU134244 lncRNA downstream 108578 4352619 ~ 4353757 (+) False G90660
TU134231 lncRNA downstream 215598 4459639 ~ 4465868 (+) True G90659
TU134306 lncRNA downstream 227024 4471065 ~ 4471744 (+) True G90700
XM_043254839.1 mRNA upstream 233544 3881586 ~ 3948955 (+) True LOC122356299
XM_043256022.1 mRNA upstream 349949 3809058 ~ 3832550 (+) True pkdcca
XM_043255416.1 mRNA upstream 423364 3729913 ~ 3759135 (+) True ubr2
XM_043255862.1 mRNA upstream 453031 3717296 ~ 3729468 (+) True si:ch73-193i2.2
XM_043255861.1 mRNA upstream 465205 3713833 ~ 3717294 (+) True LOC122356793
XM_043255728.1 mRNA downstream 81597 4325638 ~ 4348853 (+) True plekhh2
XM_043255864.1 mRNA downstream 116494 4360535 ~ 4362542 (+) True LOC122356796
XM_043255865.1 mRNA downstream 119982 4364023 ~ 4373553 (+) True si:ch73-105b23.6
XM_043256129.1 mRNA downstream 129173 4373214 ~ 4377830 (+) True LOC122356983
XM_043255643.1 mRNA downstream 143140 4387181 ~ 4391197 (+) True calm2a
unassigned_transcript_1924 other upstream 110600 4071806 ~ 4071899 (+) True trnai-uau_4
XR_006252399.1 other upstream 352758 3809053 ~ 3829741 (+) False pkdcca
XR_006252394.1 other upstream 468736 3620406 ~ 3713763 (+) False prkn
TU133843 other upstream 732482 3449401 ~ 3450017 (+) True G90377
TU133812 other upstream 901502 3277837 ~ 3280997 (+) False G90348
TU134595 other downstream 748286 4992327 ~ 4997896 (+) False si:ch73-49p17.1
unassigned_transcript_1926 other downstream 2887385 7131426 ~ 7131496 (+) True trnag-gcc_68
TU135767 other downstream 3592149 7836190 ~ 7838941 (+) False chchd1
XR_006252298.1 other downstream 3614657 7858698 ~ 7881483 (+) False zswim8
TU135961 other downstream 4062445 8306486 ~ 8310824 (+) True G91833

Expression Profile