RNA id: TU134415


Basic Information

Item Value
RNA id TU134415
length 1055
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G90785
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 4560776 ~ 4584961 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAGATTTATAAGCTTTAATAAGATATCAGTGCAGAGATACAACTTATTGGGTAAAATTTCCCATACAGTAATGTCaacaataatcataataacaGTATCATAATAATGTCAATATACatttagcatattaaaataagtacgtacttgctttattttttcgttttataaaaaaaaaaaataaaactgcctATTGTATGCGTTTATCTAATGTTGTCTTTAAAGTTGAAGAAAGCCACAAAACCAGTGGCGCACATAAGGGCAGTGTTATCTGAGATCCAGTGGGTTAAGGGGGCTCGTTCTGGTCAGTGACCTTCATAGTAGTACAGACATACATGTACCAGCGCTTTCTGCACATTCAAACCTCACGCTAACGTCTTCATACGGCTGCACTGCTTTGAGAAAGATATACGAGTTCACCATTTCCTCCTTTGGCATTAACATCTGAACATTCAAGTAATAAGCGTAGAACTGCATTGCTTTGTAGTTTAGTGTTGAACGCTACACGATTCAACGGGAAGCGACCTAGACTTCCTGGTGTTAAGGCACCTGTAACATGTTTAAATATGGGATTATTGCCGTTTGTTAAAACCGAAAGCTTTAAAAAGCACGGGCGCATCGAGTGTAAATGTATCCGGCTCATTTGGGGGAAAATATGCAGAATTTCACCCAACAGCAAATACATTCTTCCTAGACGCGAAGATGAGAAGAGTTGTGTTATCTGTCTAGCACTGTCTATCACTCCAGCAGATCAATCACTGAAAGGTCTGGGAGATCTAGTTTGAAATCTCCTTTTTGTTGGAGGAGTTAAAACACTTATAATCCACATGTGCACTGACATGTACTGGAGGTCATATTAAAGGcaatatcacaaaataaagtatgtttttatatgcgtgtgtgtgtgtgttttattggtcACATTTGAGAATTAtaaaaattccaaaaatattttcttttggggggtaaaatgtgacaaataaaaataaacacattttgatcattttattatataaaatatacttttttttttttattttttttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134375 lncRNA downstream 147005 4390355 ~ 4413771 (-) True G90750
XR_006252372.1 lncRNA downstream 213252 4338842 ~ 4347524 (-) True LOC122356721
XR_006252373.1 lncRNA downstream 218056 4338842 ~ 4342720 (-) False LOC122356721
XR_006252374.1 lncRNA downstream 218089 4338842 ~ 4342687 (-) False LOC122356721
TU134189 lncRNA downstream 507390 4053138 ~ 4053386 (-) False hcar1-3
TU134496 lncRNA upstream 105924 4690885 ~ 4698612 (-) True col13a1
TU134506 lncRNA upstream 165471 4750432 ~ 4750968 (-) True G90842
TU134515 lncRNA upstream 244790 4829751 ~ 4833144 (-) True G90846
TU134800 lncRNA upstream 373422 4958383 ~ 4959411 (-) True G91022
TU134803 lncRNA upstream 379641 4964602 ~ 4964959 (-) True G91025
XM_043255442.1 mRNA downstream 88826 4462022 ~ 4471950 (-) True socs5b
XM_043255262.1 mRNA downstream 114488 4441892 ~ 4446288 (-) True prop1
XM_043255258.1 mRNA downstream 123284 4404523 ~ 4437492 (-) True ttc7a
XM_043254528.1 mRNA downstream 207025 4351284 ~ 4353751 (-) True epcam
XM_043256154.1 mRNA downstream 235301 4245731 ~ 4325475 (-) True thada
XM_043255642.1 mRNA upstream 22263 4607224 ~ 4611108 (-) True galm
XM_043255633.1 mRNA upstream 41427 4626388 ~ 4672250 (-) False hells
XM_043255632.1 mRNA upstream 41430 4626391 ~ 4633648 (-) True hells
XM_043254512.1 mRNA upstream 88005 4672966 ~ 4689168 (-) False LOC122356061
XM_043254511.1 mRNA upstream 88005 4672966 ~ 4689168 (-) False LOC122356061
TU133931 other downstream 1538914 2990418 ~ 3021862 (-) True G90445
TU133704 other downstream 1933619 2626328 ~ 2627157 (-) True G90311
TU133689 other downstream 1975445 2584196 ~ 2585331 (-) True G90304
TU133469 other downstream 2315698 2151837 ~ 2245078 (-) True G90161
TU133318 other downstream 2868841 1684449 ~ 1691935 (-) True LOC122356758
XR_006252267.1 other upstream 88005 4672966 ~ 4689168 (-) False LOC122356061
XR_006252269.1 other upstream 88005 4672966 ~ 4689168 (-) False LOC122356061
XR_006252268.1 other upstream 88005 4672966 ~ 4689168 (-) False LOC122356061
XR_006252266.1 other upstream 88005 4672966 ~ 4689168 (-) False LOC122356061
XR_006252265.1 other upstream 88005 4672966 ~ 4689168 (-) False LOC122356061

Expression Profile