RNA id: XM_043254956.1


Basic Information

Item Value
RNA id XM_043254956.1
length 5657
RNA type mRNA
GC content 0.45
exon number 38
gene id col13a1
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 4690882 ~ 4779732 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCTGTCCGCGACAGAGAAGCGAAGGGTCCCGTTGTGAGCGCTGGAGAGCCGTGCAGCGTGTGTCAGGTTTCATTCAGAGAGAGACTCAGGCGCTCAGCAGTCAGACAAACCCGTCAAATGGCACGACCGAAGCGCGCAGACTCCCACTAGAGCCGGAGCTCACTCAACAATTATCTCCATGCGCTTGGATGAGCGGCATGCCTCAGTCGAGGTCGTTTTGAAGATCGAGTTTTCACACGAAAAGCGCTTTAACTGCCAGGAAGGAGAACTTTAATCAGTTTATTTGAGCACGAGCCCGTTCGGTGGTGGATAAACATCACACAGCCTAAACAGGTCTCGCAGACATGGAGGACATGAAATTGCGAGTATCACCTCAGTCCGGTCTGGAGAGGACCTGCGTCCAGCATCCCTGCCAAAAGCGCCTTGTGACAAACTGGAAGGACGCGTGTGCTGTCTGCGTGTGTTTGATCTCGTTTGGAGTTTGCGTGTTGCTCTACCTGAGGACGTCGGACCTACAGTCCAGGGTGCTCAGTTTGGAAAAGGACAGAGACCCCCGCACCTCCAGCTGGATCTCTCTGGAACAGGTGGAGCCCGTCCTGTGGAGTCGACTGGATCAGATATTAGAGGAGAAATTAGCAGCACGTCTGCCGAAGATCCGTGAGGCTCGGGATGCTCCTCACAGCTGCATCTGTCCACCAGGTCCTCCTGGTCCACCTGGACGAGCAGGCTTTCCGGGAGACAAAGGATCAATGGGCATTCCTGGAAGAATGGGCTTAAAGGGAAACCTGGGGGAGAAGGGAGCGCCAGGAGAGCCAGGTCTGTCTATCATTGGCCCACGAGGACCTCCTGGACAACCCGGAACTAGAGGATTTCCAGGCTTTCCGGGCCCCATTGGCTTGGACGGGAAACCTgGACAGAATGGTCCAAAGGGTGATATGGGTCCTCGTGGTCCTAAAGGAGTACCAgGTGAACCTGGTCCAAAAGGAGAGAAGgGTGTATGTGGCGACTACACTCACCGGAAACGCCGTATTGTCAACGCCTGTGCTGGAGGACAGGCCACACAGGGCGAGCCTGGGGCTCAGGGACCACCGGGACCTCCTGGCCCCCCAGGGCCTCCAGGGACTCCTGGCCTAACTGGTGTTAGTGGGCCCCCAGGTAAACCCGGAGAACCTGGAAAACCTGGAAAAGACCCAAGAATGCTACCGGGCCTGAAGgGTGAACCCGGTGTACCTGGACAAAAGGGTGATCGAGGTGAAGCTGGCCCAAGTGGACCTGAAGGCCCCAAGGGAATTAAAGGAGATGAAGGAACGAAGGGTGAGAAAGGCGAGCCTAGTGCTGCAGGAGCTGGCATCAAAGGAGAACCAGGTTCCCCGGGACAGCACGGACAAGCCGGACCCAAGGGTGAGAAAGGTGATCAAGGCATAAAGggTGATCCTGGCCAGGAAGGCCCATCTGGACCAAGGGGCCCACCAGGTCCAACTGGGGAGCCAGGGAAATCTTTAATcaacaacaatgaaaatgaTATACGCAACGTGCATCTAATGggcCCTCCTGGTTTGCCTGGACCTCCTGGGCTTCCCGGGACCCCCGGTTTGAAGGGTGATGTTGGACTTCCAGGTCCCCCTGGTCTTGATGGGGAAAAGGGTCCGAGAGGAAAGCCAGGAGAACTGGGACCCATCGGCCCTCCTGGACCTGAGGGACCTCGGGGAGAAGGAGGAGCCATAGGCTTGTCTGGGCCAAAAGGAGACAGGGGTGACATGGGCCCCTCAGGGTCACCTGGTCAGAAAGGTGAACCTGGGGAGAAAGGAGATAAAGCAGAACTGGTCTATGGGCCTGCTGGACCTCCAGGGCCAGTTGGGCCATTGGGACCTCCAGGTTTGCCAGGACCAAAGGGAGAACCAGGAATAGGGCTTAGAGGAGAGAAGGGATCGTCTGGACAGAAAGGAGAGAAAGGAGACAGGGGCCATCTCGGACTCCCTGGTCTGATAGGACCAGCTGGAGTGCCTGGGCCTGCAGGACCAAAAGGAGAAATGGGGGAAAAGGGTGATATGGGAGTTGCTGGACCAATTGGGCCTCAAGGCATCCCTGGTTTAGTAGGACCACCGGGATTAAAAGGAAACCGGGGGGAGAGGGGCAAGAAAGGCAACAGGGGGGCCAAAGGGGATAAGGGAGACCAAGGAGCCCCGGGATTAGATGCCCCGTGTCCGTTGGGTGATGATGGTTTGCCGGTACCCGGGTGTTGGAATAAAGGTCAGAATCCGTTCCAGCTTGCCAGGAAATAATACCGCCGTGAGATCCGCGGGGTTCTGGTTCGATTTCCTTCATAAGCAACGCAAAAACTTGAAGAGGTTTTGGGAGATCTTTGAGTCCGGCCCGCTCTTTGGTGGCCGTTTGAAGGTTTATCCCCATCCCGTAGTACCGAAAGGCTCCGGAGAGCGGCGGAGGCGAGCAGACCCGACACCGACCGGCCTGCGGAAAAAGACGACAAACGCAAGACGTGGCCCGTCGTTTCTCCAAGCGTTacaccttttctttctcttttatattGTTCACTAtgtgaaagaaacattttagcaCATTTCGTTCCTCGATGTCGAATGATGTTTGCGGTCAGAGGATCCCAGCGCAGCTCGTCGAACACGCGCCGGTGTTCGTGTGTTTCCAGACAAACCAAAGAAAGACGAAACGATTCCTGATTTAAACTATCACTGCCTTCTGTCGAGGGTTGCGGGTGGAATGCAACCCCGCACTTCGTCCGCGCTCGCGTTTAAGTATGTGCTTTTCTTTATGCGCGTGTAGGCCGCGGTCATGCTTGTACATGGCGCAGATATTACAGACTAACTAAAAAGTGAGAATACAATAAGCTGTCCGGGCTAAAAACGAAGGCTATCGCTGTAACTAATTTAAATCGACGTACCAACTAAATTTTacttcaacaacaaaaaaaatcggGCATTTTATGGTGTTGCAACATTTCACTGCTGTAAACATAGATGTCAGCGCGGCCTCCATCTGTATATTTCGCCAGCTCTTTATAATGCAAATAACTGCTTTCAGTTTGTTTGGGTAAATGTACTCGAACAGAATATGCGGATACTTTTCGGATCGTACCGGGGCAGCTAAAGCAACAAATTAAACCAGCGGTGACACATTTGGCCGTTTAACTTATCGTTGGTTTAGCATATGTTTAAACTGCTTGTTTATATGCCTACAGCTGAGTAGAGTAAACCTCCTTTGTTGACATGAAAGCTAATTTTGGTTGTTATTATTACCAGTCACAGAATATACAGTACTGCTATGGGATGACAAGGCCACATCGAACTGTAAGGGAAAAtaatctttcatttcttttaaaactataacctggatttttttaaaaatgatgtggTGTCATATGTACCAGcagctatgtttttttttttgttttaacctCATGCAAGCATTCCTTATATTATACTTTGACTGTTTCAGACAAAGATCGGTTGTATATAAACCCACTGTAAATGTAGTTTCATTGAATCTTCCAGTATGTCAGTTTTAATAGATCAAGGTGTTATCCAGATAAATGAAATTAGTTTGCATTCAACTCCTGAAGAACTGTTTCCTCGTCGGTATAGGTTGCGGTTTTCATTGTATTCTGAATTAgatacagaaaaagaaagataacgttaaatgtgtttatttaaaactttcgTTATTATTGTAAATGACTGAGAATCTAATTTTAGACATTAAATTGAATGATTTCATAGAGATACACTTAAATATAAAGGATCTTCAGTGGGTTATTGGGGCTCATTTTCACTGTTTGAGGGTCTTGACTATGATTTTCTGGAGATTTAAAGTTCTTTATTAATTTCTAGTATCTTTaaatcactattttttttttaagaattggCATTAGACTGTAAATATACTGATTTATGGCTCCAAGGTAAATCCCTTTTAACTGTTACCTTTATTTCTAAGTGTGTTAACACCTGTACATTTACAGACgtgcattattttatatcagTAGGCAGAGAATTGTTAATATTTGCATCAAACTTCAGATTATAATAACTGCCAAAAAGAagagaaatacatatttttttgttgttatattcTCAAACTGGTTGCACGTATGACTCCTTCTGGATCCACTCTCATAATGCTAAATTTACAATGCTCATAAAACAGGATGAATCTGATCTTATGCATTCTGCATTATATTAGCATTTGGGTGATTTTTTTGACTTTAGGGCATGTTGTAAAGTGTTTTCGTTTTGTTGTACACAAGGCAtcgtttctcttttttttcagtataattTTGCAcattgaagtgtgtgtgtgtgactttttctatgttttgaacaagaatataatatttgtacTGTACATCGTGCGTTTTCTACACATTTCCCTTTTTTGACGAACGTTGTGAATCTTGTATTGTTCTTTGTGCAGTGTACTCTTTAAATGATGTGTCACGCCGATATAAATATCCTGACTAGATTCAGATCTGCCACACGGCAGTTAAAGGACAACGGTAGTgcacccaaaaaataaaagtgcagaTTAGGAGAAACTCAGCATGACATCCCTTTCTCAGCGACagatcctctgtagtgaatgggtgccgtcaggttGAGtgtccaaactgctgataaaaacataatacacataactccagtccatcagttaacattgAGTAAAGAGAAAATCCTAATGCAtcattaagactttttttactttaaacggCTGCTTCTGGCTAACATATGACTCCACagtaattcataattaaattaattaatttaatcctCTGTTTGAGCTCTCactttgacggcacccattcacccaTTTAGGGgatataatgcaaaatttctccgGATATGCCTCTCTAGATAATCTTTTGatacagctatatatatatatgtgtatgcatatgtttGATTAGTCAGTTATTatttgcaatattataaattgaCCCTTAATGAGGAGTACACTTCCAAGCTGTCAAGCTGAGCTAGGAACATTAACCCAAGTTGCCAGTTGTATTTTTTGATGCCAGTTTATTCTTGGATCATTCTgatctctttctcacacactgcCTATTCGTGAGCACTGCTGTCTTGTAGGAGAAGTTCAGACTTTGTTCACCAGCTGCTCACAAACACttttatctttacatttttcGTTAAGTGTGTTTCATACCAATAGCAAATATGTTATCAAACATTTTGTGTGATACCTTcgatgctgttgttgttgttgtacgTAATCGAAAATGGATAAGAGggcatttatttctgtgcttGTACGGGAAGTGCAAATGCAAGATAAATTGCAGCCGCTTGCATGGATATTATACACCTACTTGTATACATTTACAGCCTGACTAACGTTTTCCGTTCTGATTGACTAAAGGTTGACTTTACGCTTCCTTCCTTCTTTAAAATGCTCAAAATCAAGCATCGAGTAAATATGTAAACGTTTATTATTGTTGATTCAATATATGCTTCTGGAGAAAccaactttttaatgttttgttgatttCGTTTTTTCATAATGGGATTATGtttatgtagtttatttatttttagctttttgtttgtttttcaaaaaatacgTCTGAACTGTATTAGCCGGTGAAATAAAGGAAATGAAATAATGGAAA

Function

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134419 lncRNA downstream 68078 4549111 ~ 4622804 (-) True G90786
TU134415 lncRNA downstream 105921 4560776 ~ 4584961 (-) False G90785
TU134416 lncRNA downstream 105921 4560776 ~ 4584961 (-) True G90785
TU134435 lncRNA downstream 120124 4545021 ~ 4570758 (-) True G90802
TU134375 lncRNA downstream 277111 4390355 ~ 4413771 (-) True G90750
TU134515 lncRNA upstream 50031 4829751 ~ 4833144 (-) True G90846
TU134800 lncRNA upstream 178663 4958383 ~ 4959411 (-) True G91022
TU134803 lncRNA upstream 184882 4964602 ~ 4964959 (-) True G91025
XR_006252371.1 lncRNA upstream 348792 5128512 ~ 5129707 (-) True LOC122356716
TU134865 lncRNA upstream 350631 5130351 ~ 5130949 (-) True G91066
XM_043254511.1 mRNA downstream 1714 4672966 ~ 4689168 (-) False LOC122356061
XM_043256111.1 mRNA upstream 58058 4837778 ~ 4904092 (-) True gbf1
XM_043256063.1 mRNA upstream 151699 4931419 ~ 4955793 (-) False ninl
XM_043256062.1 mRNA upstream 151699 4931419 ~ 4955793 (-) True ninl
XM_043256066.1 mRNA upstream 151699 4931419 ~ 4955771 (-) False ninl
XM_043256065.1 mRNA upstream 151699 4931419 ~ 4944569 (-) False ninl
XR_006252267.1 other downstream 1714 4672966 ~ 4689168 (-) False LOC122356061
TU135397 other upstream 1445541 6225261 ~ 6225733 (-) False LOC122356805
TU135441 other upstream 1578481 6358201 ~ 6390715 (-) False sdccag8
unassigned_transcript_1925 other upstream 2351425 7131145 ~ 7131215 (-) True trnag-gcc_67
unassigned_transcript_1927 other upstream 2355352 7135072 ~ 7135142 (-) True trnag-gcc_69
TU135889 other upstream 3263845 8043565 ~ 8047901 (-) True G91775

Expression Profile