RNA id: TU134515


Basic Information

Item Value
RNA id TU134515
length 3366
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G90846
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 4829751 ~ 4833144 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGCGCAGCAGAGTCTCTCAAAACAGTAATACAACTAAACGATTGGATAATGGGTTTTTTGGTATTTCGCTCCACGGTTCCCACCTGCTAAGTACTCGATGACGGCTGCCATGTAGACGGGGGCGCCCATGCCGATGCGATACTTATGGGTTCCTGTGCGCAAGTAACGCATCATCCTCCCGACGGGAAAAATGACCCCTGCCCGGGCAGAACGAGACAGCTTGGTGATCTTCTTCTTTCCTCCTCTGGCTGACATCCTGCCTTttctgtggagaaaaaaaatcaaccgTTTGTCCCGTCGTCGTTTGATCAAGGTAACAATCCTGGTAATGAAAGCGTCAGAGACCGAGCGGGCCCACCTCCTCTTGACTCACAGTGCCACTGGATGGAGTACCTACGGAGAAACCGAAACAAAACCATTGACTCATTAACATCTCTGAATGTGAACTCGACAGACTCCATCTGCTTCGACAGATGACGCTCTCGCGCGCTCCTATAGACGTTAATGACTAGATTAGCCTGGGAAACGAAGCTAATACGTAGACACGTTTAAAAGGTTACGGCTTTCTGGCCACCGTTTAAGCCCTTTTCGATCCATTGACTTTCCCGTCTGGATAACTCTGCAGGTTTGCATGAAGGTATAACCAAAAAAATCCGAACATAACATATCGATCGCTTGGCTGAAATCAAAGAGCACAAGCTTCAAAGCTGCAACGTTGACTGAAAGTGATGGAGATGGAGCATTTAGGCCTGCACGTCTTCAAAACATTAACCTTTGTCGTGCAGCGCGTTGTATTATACGTTAAAACCAAATCCTGAGGGCGACGTAATAACCGTTTTCTTTCGGTATCCAAAGACGATGCTTAAATTGCAGTGAAGAGTGTAAAACTAGTGcttggaaagaaaacaaaaaacaattggGCTGCATCTGAAATCGCAAACTTCCTCACTATGCAGTAAGAAAGCGGTTATCTGTTGCTCCCAGGATTCAGTCAACTTGTAAATTGACGCTGAAAGTCACGTGACACCGACCCCATGTCCTCTAGAAGACATACTCCATTCATACTCCACACATACTACTGTTACACTCGTGCtgtacaaaacacacattttagcGGTCACAAggtaattaattacttattCAAAGTATGCGCTCGAGAGAGTAGCGTTACGCGATTTCGGAAGCAGCCTTGGGCGCCATCTTGTGAAGAAAAGGGATATGAATACTTTAAAGCAGATTTTGACGTAAATATTATGCCTGCAATCAATCGCATGTCCTTTTAAAGAACCCGAAAAGTTGATAATGAAACGTATTTTGCTATATTATGGACctcgttttatatatatatatatatatatatatatattttttaagtaCACTTATAATACTGTACTTTGTTTTAGATCACCTTtgcatcaaatttgaaaaaaaaaaaaaaacaatatagagCAGTGGTATGTTAAATGTAATAGCGTTCTCTTCTGATATAATCTCTCTTCTTTATAATTCCATctcaattctttttttcttttttttttgaaagtcatGAAAACACTCTTGGGAAAAcgggaatgcaaaaaaaaatgtatttgtgtttctGCGATGTGAAAAAGgtccattattattatatattaattacaaaatatacgTTAAGCATAATTTTCTAATagataaaaaagttaaataaaaaggtaaggtaaaaacagcaacaaacgAGCAAGATACAGAATGACTTAAACTGGAGAAAGATACATAAATTGTATATTGGGTTCCTGATTAATAggtttttatgtcttttttttttgcatagccGTTAATTAGCAGGATAACGCAGGCTATctttttttcatgaatgaaaTGTGACCTGGACCCGTTATTCGCAGGTTTCGTGAGATTTATCCACGTAAAACAGTTGAAGCACTGCATGCTATAAGGTGTTTTATGCACGTTGACCGTTGCACacacagtttttattcatttgtttatttagctgACCCAAAAAAAGCCTGAAAACCGGACCGTTTCGCCCAACTGCACAAACATGACCCGGGGTCTGCGACTGTCTGCGCGGCAGCAGCGCGTCCCTCAGCCCGCGGCGACCCCGCGCTGCCATCGCGAATTAAAGGCGCAGCGCGTCTTTTAAGATAAACAGCGGACGTTCATAAACACGGCGCGCGATTCCTCCCCGCTATAAAAAGTTTCGCCTCAAATATGTGCGACAAAAGACCCGCCTCCTGCCAGCAACGGCGCGTTAACACCATTATATTCAGTCGGGATGCGGTACGTGATCGCAAGGCCGTCGCCAAATCCAACGCGTACGATCAAAGGCCTCGCCTTAACTTCGCCGCTTCTCCGCTAAAACGCGCGCGAAAACACGGACACGTCCGTGCAGCAAACGCGTCGTGCACAAATTCGCAATCGTGTTTTTTTAAACCCCGCTCCTCCCACACCAGCTCAccccccattttgttttttttgtttttttttttttttaccccgccgcatttacatacagtaaaacatCGCAAGCGAGTGATGCGTTTCGACGCGACGCGACCGCAACGTTGTTGTTCTAATCGACGCATCCGCGAGCGTTCGGCTTCGTGTTTTTAAAATGCGAACGCCGTCGTTCCGTCGCGCGCGCGCGCCGCGTACGGTGCGTTCGCATGCGTCGCATCGCGCGCTTATCAGCTCGATATCTCGTGCCAATATTTACCTGTTTGTTCTCTACAAATGCGTCATGTACGAAATATATCTGTCCTCTGACAGGCGCGAATAAGGAGGAGTTCCTGGTCTTATTCCTATTCACTGTCCTTGTGCGCCGAGCCTCTGctgttccttaaaaaaaaaaaattacagagagagagagagacacaccgCGAAAAACTACAGCAGCCAGTACCACCGTGCTGTCGATGGAGGCAGGCTTtaggctgctgctgcttctcatttaaaaaacatcgCATTCGAGATATGAAATGCATTACGGCGCGGCCGATGCGACCCGCGCCAAATGCACCTTTAAGCGAATACGGGATGCGTTTGTGTGGGTATCATGCATTTATCGTGATCATTAATTAATTCGCCACAGACAGCTGCAGGTGACTGGGAGATTGACACTTACTGTAAAAATCTCTCTTCACCTGGTCTCTACGCGATGGCGTGCCGATCTTCGTTCATTTTCACCTCTCCTAATGAACTCGGTCGGATGCgcgcttttgaaaaaaaaaattaacctcACGCGCTCCGCTTAAAAATCGGACCTCTTCATTGCGAGTTAGGATGGCCGTGCAGCTGCTCGGTTCTGATATAACGGCCTGTTTCGATGGCGTTTAGCGCCCGCGCAACCCGTGCTAGACCGAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134506 lncRNA downstream 78783 4750432 ~ 4750968 (-) True G90842
TU134496 lncRNA downstream 131139 4690885 ~ 4698612 (-) True col13a1
TU134419 lncRNA downstream 206947 4549111 ~ 4622804 (-) True G90786
TU134415 lncRNA downstream 244790 4560776 ~ 4584961 (-) False G90785
TU134416 lncRNA downstream 244790 4560776 ~ 4584961 (-) True G90785
TU134800 lncRNA upstream 125239 4958383 ~ 4959411 (-) True G91022
TU134803 lncRNA upstream 131458 4964602 ~ 4964959 (-) True G91025
XR_006252371.1 lncRNA upstream 295368 5128512 ~ 5129707 (-) True LOC122356716
TU134865 lncRNA upstream 297207 5130351 ~ 5130949 (-) True G91066
TU134900 lncRNA upstream 427921 5261065 ~ 5262123 (-) True G91085
XM_043254937.1 mRNA downstream 50019 4699153 ~ 4779732 (-) False col13a1
XM_043254929.1 mRNA downstream 50021 4699154 ~ 4779730 (-) False col13a1
XM_043254946.1 mRNA downstream 50025 4699154 ~ 4779726 (-) False col13a1
XM_043254921.1 mRNA downstream 50025 4699154 ~ 4779726 (-) False col13a1
XM_043254923.1 mRNA downstream 50025 4699154 ~ 4779726 (-) False col13a1
XM_043256111.1 mRNA upstream 4634 4837778 ~ 4904092 (-) True gbf1
XM_043256063.1 mRNA upstream 98275 4931419 ~ 4955793 (-) False ninl
XM_043256062.1 mRNA upstream 98275 4931419 ~ 4955793 (-) True ninl
XM_043256066.1 mRNA upstream 98275 4931419 ~ 4955771 (-) False ninl
XM_043256065.1 mRNA upstream 98275 4931419 ~ 4944569 (-) False ninl
XR_006252267.1 other downstream 140583 4672966 ~ 4689168 (-) False LOC122356061
TU135397 other upstream 1392117 6225261 ~ 6225733 (-) False LOC122356805
TU135441 other upstream 1525057 6358201 ~ 6390715 (-) False sdccag8
unassigned_transcript_1925 other upstream 2298001 7131145 ~ 7131215 (-) True trnag-gcc_67
unassigned_transcript_1927 other upstream 2301928 7135072 ~ 7135142 (-) True trnag-gcc_69
TU135889 other upstream 3210421 8043565 ~ 8047901 (-) True G91775

Expression Profile