RNA id: TU134595


Basic Information

Item Value
RNA id TU134595
length 2420
RNA type TUCP
GC content 0.41
exon number 4
gene id si:ch73-49p17.1
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 4992153 ~ 4997991 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTTGGCAGGATGAGCACGAGCGCTCTGACAGCGTTCAACAGTAAGTTTCCGCTGCGGGTCAGACGCGAGCTCAACTGGACAGACTGATGCAAACGGAAGCTGTGCGAGTTTAACGGGAGGATATACTCGGTGTGACAACGTCCCTGGCGCTTCACGAACAGAGAATGACAGATATAATGAATAACCCAGAGCACAGTCGGGAAGACTTCACTGTGAGTGACAGCGGAGAGCAAGGTGTTTCCTTTCAGATTTTCCCAGACACACAGGAGCGCCCCAAGGTGTTCAAGCGCCTGCCCTCCATCGTAGTGGAGCCCACAGAGGGAGAGGTGGAGAGCGGAGAGTTACGCTGGCCCCCAGAAGACCCTtccagccaaacacacacacccatgtCCGCTTCACAAACCCAGATTTCACACAGCCAGAGCACAGATGAAGTCAAGTGCAGCAGCCTGGAAACATCAGGGGCAGCTGAGCGCGACTGAAATTTAATAAATAGGCTATCACAAGTCTGCCGTTATCACAACTCTCGGTTCTCACACAAATTTTCACACTTAGAAGACTCAAATACTGACAAGCAACGCAAGCAGCCAATCCGGCAGGCATGTGTGAACAAGATCGGTACTCACAATGCTATATCTGAGCACCCTTTATAACACTGTCAtggctctaaaaagacttttgaaagtcttttgtactttttaagaTCAAACTCATGACACATTTCATCTGTGGAAAGTGGCTTTAACAATCTTACACTGCCTTCATACTTAAAGgcacagtaaaaatgtatacgTATACGAATTTGGATGTCACATCAAAAATGGATTGTATGAGCACAATTTCAGCCGAAAATATGAATGTACAGAGTATTATTCTAGTATAAAAACAATGGATCTCAAGTAAGCAATGTGCAGTCAGTTAGCCAGTATTGCTCTGTTATTTAGCTTTATTGACCAGCTGATTGTATTACTTCACTTAATACGCTTTCACgtatcatttaaaatagatgtgaaatattaaattcatgtgtgagatataaaaatcacaaagtGATACAGATTTAAACAAGCACAGAAACGTGGGAAACCGATTGCCAGGTCCGCTGTTTAACGGTACTCATAAATATTTGACCACAGAAAGTTAAATTGCAGCTTTCTCTGgtcaaatatttatgtatatttactgTTTATGTCTATTGGACGATCAGAATGAAGTATTCCAGAGAGCCATGTAATGAGCACAACACGCTCAATGGTTTGGGGTGCTTTGATGATCCGTGTCAAATCTAGAGAGAGATGTATTGATTTGTTATCATGCCCTCCACTTTGATGTATCCCCGAAGCCTTCGAATGCATATTCTAAAAAGATTGCAGTGACCACTGTGAGTCTCTCACTCATGTGAAAATTATTCATTACACGCTCGGCGGCTGAAAACTTTATGCGAGGAGACTCCATCCTCTCTCCGCACCATCTGGCTGAGGCTTGTGAGGAACGACTGCTACTGAACTTCAAACATGTCTGCCTGTCGATCAGCCCGAGGACAAGGACTTCCTCATATCTCCGAGCCCTGTCTGACTTTCCGCAGACTTGAAATTATTAGAGGCGCTTGTGCACATACACAATATTTTCAAAGCTCGACTGGAGCAGGAGTCCCGCACCGGACTACAGAGAGAGAATGCCTGTTAGACGGCTTAATTCAACTTCTGGCTATAATTAGTTGCGTCTGCTAAGACAAGCATCGTGTGCTATCGCTATTTTCTTTCTTGGGGCTAGGAACTTAAACAGAGACCTATCCTTGAGTATTATAGAACTTATTCTCAACCGTTTGTACAACTGGCACGAATGATACACCAAATCAAGCTGGGAAATTTTGGGAAAGGCCGAGTCTGATATTGTATCTGCAAGTATTGCACATATAGGCATAAGACACTTCAATTTTCcatgtacatttttacagaatattTACATAGTATCTACTTTAACGGTAATAGATTAGATGTTGTAGTAATATTGATGTGATTCTCGAACCACTTCTCAACATACATAGCCCTCCTgataatttcttcatttttatgtagTGAAAATGCCTTGTTGTGTATCTATGTTGTTTATAGTCTATATTTTGAAATGGCCAGAATTGACTActgtaatattttcataatcCCTCAACTTAAGGCTTGTGTTTGCCATAAAAACACTTCCCAACACTATCATATAAGGTGTCTCcgtcaggattttttttattggcatgCGTTAACAGTTTTGACTTTTAGCACTTTTTCAAGGATAactataaattacatatttaaccAGCAGACACATATTCTAGAAAACCAGAtcagattgattttattttgttctattaCTATTTCTATTTAAGATTTGCCTTCATTGCACCATCAAACCTGTTGTAAAAATg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134586 lncRNA upstream 27312 4964702 ~ 4965015 (+) True G90888
TU134323 lncRNA upstream 296485 4625603 ~ 4695842 (+) False si:ch211-250c4.5
TU134314 lncRNA upstream 366783 4583808 ~ 4625544 (+) False si:ch211-250c4.5
TU134315 lncRNA upstream 407361 4561648 ~ 4584966 (+) False si:ch211-250c4.5
TU134306 lncRNA upstream 520583 4471065 ~ 4471744 (+) True G90700
TU134562 lncRNA downstream 5514 5003410 ~ 5013662 (+) True G90879
TU134605 lncRNA downstream 37463 5035359 ~ 5036116 (+) True G90905
TU134670 lncRNA downstream 179822 5177718 ~ 5178021 (+) False rab11fip5a
TU134687 lncRNA downstream 272705 5270601 ~ 5271199 (+) False ap5s1
TU134692 lncRNA downstream 399599 5397495 ~ 5435571 (+) False G90957
XM_043255737.1 mRNA upstream 4103 4968173 ~ 4988224 (+) True LOC122356724
XM_043255738.1 mRNA upstream 4103 4973376 ~ 4988224 (+) False LOC122356724
XM_043255962.1 mRNA upstream 29607 4957649 ~ 4962720 (+) True aifm2
XM_043256067.1 mRNA upstream 60617 4929198 ~ 4931710 (+) True gins1
XM_043254673.1 mRNA upstream 75172 4905566 ~ 4917155 (+) True pitx3
XM_043254503.1 mRNA downstream 57257 5055153 ~ 5063464 (+) True cpxm1a
XM_043254661.1 mRNA downstream 77033 5074929 ~ 5076519 (+) True grxcr1b
XM_043255960.1 mRNA downstream 100678 5098574 ~ 5105932 (+) True si:dkey-33c12.4
XM_043255721.1 mRNA downstream 120934 5118830 ~ 5125392 (+) False LOC122356713
XM_043255719.1 mRNA downstream 121062 5118958 ~ 5125392 (+) True LOC122356713
TU134239 other upstream 748286 4182499 ~ 4244041 (+) False G90660
TU134245 other upstream 748286 4182499 ~ 4244041 (+) False G90660
TU134242 other upstream 748286 4241132 ~ 4244041 (+) True G90660
unassigned_transcript_1924 other upstream 920428 4071806 ~ 4071899 (+) True trnai-uau_4
XR_006252399.1 other upstream 1162586 3809053 ~ 3829741 (+) False pkdcca
unassigned_transcript_1926 other downstream 2133530 7131426 ~ 7131496 (+) True trnag-gcc_68
TU135767 other downstream 2838294 7836190 ~ 7838941 (+) False chchd1
XR_006252298.1 other downstream 2860802 7858698 ~ 7881483 (+) False zswim8
TU135961 other downstream 3308590 8306486 ~ 8310824 (+) True G91833
XR_006252358.1 other downstream 3668372 8666268 ~ 8683052 (+) False pcnx2

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01180000_06936274_06938957.mRNA True 353 mRNA 0.53 3 CI01180000 6936263 ~ 6938957 (-)