RNA id: TU134605


Basic Information

Item Value
RNA id TU134605
length 314
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G90905
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 5035359 ~ 5036116 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAACTGCTCTGGGGAAAACTGGGAGCATATGTGCCAGTCGGTGGAAATTAGTTCAGTTCTACttcaaagttgttgttttttgaagaagaagaaaaagaagaagaagaaacaacagcaaggatgaattaatcatttacattttaaCACCAGCCAATCAGGATCAACATGCTGCTGGACCCCTCCTCCTCCCCAGCACCACCTGTAGAGATCTGATAGGAGCTTCGCCATTCTTCACCATTATTTTTCAActagtcattttatttgttcCGCAGCAGAATAAAATCAAGCGTATGCATTTTCCATTGCCATTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134562 lncRNA upstream 21697 5003410 ~ 5013662 (+) True G90879
TU134586 lncRNA upstream 70344 4964702 ~ 4965015 (+) True G90888
TU134323 lncRNA upstream 339517 4625603 ~ 4695842 (+) False si:ch211-250c4.5
TU134314 lncRNA upstream 409815 4583808 ~ 4625544 (+) False si:ch211-250c4.5
TU134315 lncRNA upstream 450393 4561648 ~ 4584966 (+) False si:ch211-250c4.5
TU134670 lncRNA downstream 141602 5177718 ~ 5178021 (+) False rab11fip5a
TU134687 lncRNA downstream 234485 5270601 ~ 5271199 (+) False ap5s1
TU134692 lncRNA downstream 361379 5397495 ~ 5435571 (+) False G90957
TU134690 lncRNA downstream 397466 5433582 ~ 5435571 (+) True G90957
TU134737 lncRNA downstream 465526 5501642 ~ 5505510 (+) True G90985
XM_043256071.1 mRNA upstream 37368 4992153 ~ 4997991 (+) True si:ch73-49p17.1
XM_043255737.1 mRNA upstream 47135 4968173 ~ 4988224 (+) True LOC122356724
XM_043255738.1 mRNA upstream 47135 4973376 ~ 4988224 (+) False LOC122356724
XM_043255962.1 mRNA upstream 72639 4957649 ~ 4962720 (+) True aifm2
XM_043256067.1 mRNA upstream 103649 4929198 ~ 4931710 (+) True gins1
XM_043254503.1 mRNA downstream 19037 5055153 ~ 5063464 (+) True cpxm1a
XM_043254661.1 mRNA downstream 38813 5074929 ~ 5076519 (+) True grxcr1b
XM_043255960.1 mRNA downstream 62458 5098574 ~ 5105932 (+) True si:dkey-33c12.4
XM_043255721.1 mRNA downstream 82714 5118830 ~ 5125392 (+) False LOC122356713
XM_043255719.1 mRNA downstream 82842 5118958 ~ 5125392 (+) True LOC122356713
TU134595 other upstream 37463 4992327 ~ 4997896 (+) False si:ch73-49p17.1
TU134239 other upstream 791318 4182499 ~ 4244041 (+) False G90660
TU134245 other upstream 791318 4182499 ~ 4244041 (+) False G90660
TU134242 other upstream 791318 4241132 ~ 4244041 (+) True G90660
unassigned_transcript_1924 other upstream 963460 4071806 ~ 4071899 (+) True trnai-uau_4
unassigned_transcript_1926 other downstream 2095310 7131426 ~ 7131496 (+) True trnag-gcc_68
TU135767 other downstream 2800074 7836190 ~ 7838941 (+) False chchd1
XR_006252298.1 other downstream 2822582 7858698 ~ 7881483 (+) False zswim8
TU135961 other downstream 3270370 8306486 ~ 8310824 (+) True G91833
XR_006252358.1 other downstream 3630152 8666268 ~ 8683052 (+) False pcnx2

Expression Profile