RNA id: XM_043255097.1


Basic Information

Item Value
RNA id XM_043255097.1
length 9218
RNA type mRNA
GC content 0.46
exon number 6
gene id rab11fip5a
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 5177718 ~ 5198404 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tattcttcaaTAATTTCAGGTATGTGAACATTGTGTTGCATTCTAAGAAAAGTCTAAAAATAGGCCTCAGTGTTGATATGAAGgaatttttccatatttatttttcacaggtCTTTTacccatattttattttgaattatgcaTTGCTTCGTGTTGTGTTTAAGAgttaaaacacacaacacaatgCAGAATTGCACCGTTTACTGGCAGATTTTATCAGTACTATTcctgtttttctctgtgtgtggtGTCCTTATTGTGAACCATAAAACACTGCAGCATAAGAAAATAAGCAATGTGGACAGAAGTATTATCAATAACATATATTGCCATTATTTGGggtctaatttaaaaaaaaatggctggtCATGAATGTAAATTTCATCATTCTGTCTCATATTAcgcattaaatgtaaaaagttaacAAATGATTAAGTCTTGTCTAAATCCCCgcaagatacatttttaaatgggcAATCTCTTGGGTATCCTTGATGCTGCAAATCAGGACCCCACCAGGAAGTAAGACGTTTTCAAGCTAGGAAGAAAGAGAGTAGTATTGATGCGGGATGCTTTGTGTTTGAAACAACGTTTTAATACATGTCCAGCAGAGTGAGTCTGTGGTCTGATGCACTACACTCCatctaaaaagttttttaatcaGAACTGATGAAACGGGACATCTAAACAAGCATTGCCCTGACACTTAACCTAAAATCTCACTTGTGCCAGAGCTATAAATAAGAGAAAAGTTTTCAAGTGTCATCTACATGTATAGCTAGCTGAGCAATAACGCTCTTGTATTGACCATGCCATCGGTAGtggattatttttcatttttcggCTAGATATATCCAAGGGATAGAAAAAAGTACGGTATTTTACAAGACGAGAAGGAGAGCAAATGAAACAGTCCAGTGATTGGACCTTCTGATGACTGGGTACACGACGGGCTTAAAGGGCCTGGGGTTAAAAAGGGATTGGGATTTCTTCTGATAAATGTGCAAAGTGGATCTATGTTACagactcatttataaaatacgcacagcattcatgcatttaaagcGAAATAACTCAACTCAGGgattaaaaaacatacaacaaaatGATCGTTAATAACCAGGAAGAGACCAAGTGGAGCCTTTAACATAATAAAGATGCAATGCTTTATCTTCTTAACACGATTTAgcattagtttttaatatagcGGACGCTTTTTCCTCAAAGAGGTAGGAAGGCTTTCTCACGCTAACGCGCCGCATCCGCGGATTTTGGCCCACGCCGAAAACTATTAATAATGAACGGATTCGCGATGGTTTTCAGCGTGCGAGTTTGTTAAGTTCGCACGAGGGTTAAACCCTGCCCCGCAGCCGCAGCTTCCCCGTTTAAAGCTCGCGCATCGCGGTATCTGCAATATTATGTCATCATAAGGGCTCTCGCGCGGGCTGGCTCTGCCACAGTGCAAGTTTCGCGTTTATTTTAATCGGCCGCTTATTCGTTCGGAGGCTGCCCGGTGAAGCCGTCTTTCCTCAAACAGTCTTTCAGAGCAGCGCGAATGCGGCATGCCGTGGTCTGGGCGCCGCTGACAGTCACTTCCTCGTCCTGCGGAGAGGAGAAAGCCGTGACGTCGGTGCACCGGTCCGCAAGGCGGCTGTACCGCCGCAGAGAGAGACGACCCACGCCGGCGCGCGAACACAGACGTCTCGCGCGTGCCGGGATGCTTTGCCGCGGACCGCGTCGATAGGCTGGCGGTTACTAAGCGACGCTCGACCGGGAGAACGGCCGCTAGCAGCTGCCCCGCCGTCGGCGCACCGGCGACCATGTCCTTCGCGAAGAGCGACGAGGAGCAGCGATGGGTGCCGACGCACGTGCAGGTAACTGTGCTACGGGCCCGGGGGCTGCGCGCGAAGGGTAAGCACGGCACCAGCGACGTTTATACCATCATCCAGCTGGCCAAAGAGAAATACTCCACCTGCGTGATGGAGAAGACCACGGACCCGGAATGGGGCGAGGAGTGCTCGTTCGAGCTGCTACCGGGGGTCCTGGAGGAGGGAGGGCGAGACGCGTACCCGCCCGGTGCCGGCGACCTGACCCTCACCGTGATGCACCGAGCTCTCATAGGACTGGATGTGTTTCTGGGCCAGGCTGTCATACCTCTGGATGAAGCGTTTCAGCAACGGAAATACATGAAAAACGAGTGGTACCGGCTGCATTCGAAAACTGGCAAAAAGGAGAAAGAACGAGGGGAGCTTCAGCTGACCGTGCAGTTCACTCGGCACAACCTGACGGCCAGCATGTACGACCTATCCATGAAAGACAAACCTCGTTCTGCTTTCGACAAGCTCAGAGAACGCATGAGAGCTAAGAAGCGCTCCACTGAAGAAGATTCCTCTTCCGCCATCGTCCCTGGGGGATACGGAGCACTGGCACGCATGCGGGGGCGGCTGCCGAGCGATGGGGGCGGAGAGGAAGACTACGAGGATGATGAAGGCGGGGAGGCCCGCAGGAGTAAGATGAGAAGTTTTTTCCTGCGTGGGAGGTTGAGGAAGTCTTCAGACACGCGTTCGAGCACGTCACTGGGCTCGGAGAGCAGCGAGTCTTCATCGCGAGGCGGCAGCCTCAGCCCGACGGCAGGTATCAGTGTGGTGGTCTCAGATCTGTCCAACTCTCCGAGTAACAGCAGCAACCTCACTGCAGACAACAGTCCagAACACACAGTGGCTCCCTCACCACAGGTGTCTCCTGTCAGACATGTCATGTACGACATCAGCTTACCAGTGCCTCATTCTGTGACGTCAGAGAACGACACCCCTATTCTGCTTCCGTCAGTGTGGGTGAACGGGAATCCAGTGGAAACATCTCCTCTCACTCACCATCCGCCGTCACTCGTACTACAGCAACCTCAACCAGTAACTCAGTCAGGTCAACCACAGGCAACCACGCTGCCAGCCAAGCCCCAGAAAACCCAGTCAGCTCAGCCGAAATCCCAAGAGACACCGCTATCCAAGTCCCAGTCAAAGCCAAGGCCCGATCCCCTGCTTCCAGCCCTGGGGGTGCTTCAGAAgggctctctctccctctccctgcAGAACCTCTCCCGCCGCGGAGAAGACAAGCAGAGCGGCGGCCCCGTGGATGGCCGTCGCTGGTCCTTCGATAAACCCGGAGAGGAAGAAAAAGCCGCCATTGTAGCAGCGTTAGAGCAAGCTGGAAGAGTTACAGATGAGGTGGAGatggaaacagtgatacctgcTGGAGAGACAGAGACTCAGAGCAAGAAAAGGAGGGGCCTGTTCTCACATGGGAAAGGTGATTCGGCTGGGAAAGGACCAATCATGAGCAAAGAGGAAGCAGAACGTGCTCAACCACTTGTAGAAGTCAAACATAAAGGATGGTTCAGCTCCAAGGACTCGCACAGTAAACCCAGCCCACTGGTGTCTCCTCAGTCAGACTCCTGTACAATCTGTCCCATTATACCCTTGACCATTAATGACCCTTCACAGAGTATGGCTGACAAAAATGCTAATCCCTTCACTTCTCCCCCACCTTTTTTTGACGTCAATTTGCTCCTCCCACAAACACAGCTGAATCCCTTCATTCAAGAGCTTCATTCTGTTGCTCCTGTAACTCCTGATGTGCCCTGTCTCTTCAGCTCAGACCTCTCGCAATCTGATGGTAATGCCACCCCAGATTTGCTGAGGGCTGGAAACCAAAAAGAACCTGCCCCAATGGATATCTTATTTGATCCTTTAAATTCTAACTTCGAGGGGCTGACAAAAAATGATGACTTTGAACATTTTGCTAAGGACAGATTGAAATCAGAGGAGGTGAATGAAACAATGAATTTGGAAACACCAACTGCTGTCTTCATGAAAACGAATAATCAAGAGCGTTTGTGTGAATTGGGTGGTTTAATGGTGTCAGATACAAATTACCCAACTGATTTAGGACAAACTGTTTCAGCAAGTACTGCAGAGACATCTAAGGAAACTGCTGCGGACACACCTCAGGTTTCAGGAAGTGATGTTAATTATATTCACTCTAGTTCTAACAAGCCTGACCTCACTGCTCATGTGGCACATGTCTTCTCAGAGGTTGATTTCAATTCATCTGAAATTTCCTTGCCTGAAAATTCCAGTGTAGAGTTTTCTGATCTGAATACACTTGCATGCCCTTATCTTGCGATGTCATTTCACTCTAAGAATAAAGACGGCACTCATGACACAACTCTTGAAGACCACCcaacaatcaaacaaaatacCAAATGTGATGACACGCAGTCATCAGCATCAAAACCGAACACTATTGAACTTCCTTCTAGTATCTCTTTTGAGTTCTCAAAGGGGATGTCTGTGAGTCCTGAAACATCACAGCCTGAAATGCTAAAGTTTGCTAAAGACATTGAGTCTGTGACTGTCTTTGAAGATCCTGTGCCACTCTGTGGAGACATCAGCTCAGGTGACTCCCTGGAACAGTCAACAGTGATATCTGATTCCTTAGGTGGAGTACTAGACCACCAGTCTATTGAGCACCGTCTTTCTCCACAGTCTGACATCATTCAAAGTAATAGAATACAATCCGAAGAAGAATTTTGGGGATCAAATGCCTCACTCATTCAAAGTATGGCAGTAAGTGGAAAGTCCCTAGTTGAAGCCACTGAGTCTTCACTATTCAATGTTCAatcaggacagagtttgcttGTATCATCTGCTCTGCCAGTGAAGAATGGAGAGAAAACGGATGCAGTTATGGACACCTTGTTACAGAATGAATCAGGAAATGGTATCTTAGAGGATGTCAGTAGTAAAGATATCTGTTCTGAAATTGGAGACTTTGTTTCTGAGAACCTAATTGATGGACCTTCATTTCCAGTACTCTCAAAATCAATGTCTAATGACATGCACGAGGACAAACAAGAGAAAGTCAGTGAATTGCCAACTAGTCCATTTAAGAAAGATAACCTTGTAAGTCAGCTCAGCACCATCAGTGAAGAGGAAGAAATAATGCCTTCTAATGGACAGACACTTCCTGTAGGACATCTCCATCTCTCCACTGGAATTAGATCAGGGACAGAGGAGGATGCATTAGATCTAAACTCAGTGCTCTCACCTGGTAGCGTGGTTCTCCACAGCATGTACGACAGTGCAGATTCAGACCAGTATCTTACTTGTGTATCTCAACAGGATTTCCCAGTTTCCTCTAGCTTAGAGCTCACACAGGAAGTGAAACCAAGACATGGTCTTTCTGAGGAAGACGCTTCAGAATCTGAATCTTTGCCAAACCATATCCCTAATGTTGCGCTACAAGATTACATGTCTGCAAAAGGCATACCAGAAAAAGGCTGTAAGCAATATGAGGTCATGGCAGAAAACTTAAATCTCTCTCCAGAAGCCTTACCAAAAGAAGAATCTCCTGTAGATGTTCTACCAAATAACTCCTTATTGGACCTCCTGTCAGCAACGCATACCTTATCTCTCAAATCAGCTCCCTCGTTCAATACTTCATCAGAGAACATGATAATGTCAGATTTTGATGAAGCAGTGCTGCAGTGCAGCCCTTCAGTGGACACTGTTGAGAACTTTTCCAAAGATATGTCGCCAATTGTTGTTACCTCAGAAATGATAGCTGAACTTGAGGCTCAGCTTGCACCATTAGATTCAGACACAGGTCTGGTAGATGAGAGCCCAAAAGTTGCATCCTTTAATATAGAACCTTTTGGGATTGTATCAGAGGACAACTTACATTCAGTTCAGTTGACTGATTCTGATGCATTTGTATCCAAATGTTCTTCAGAACAAACCTCCAGTATCACTCAGGACCTTGAcctaaaaaacatctttttaccCCAGACAACTGAAATGAACCTTCGTAGTACTAACAAAAGTCTGGATGCAAACTCTAAATCAGCAGACACTCACAATGACCCAGAACCAAATCTTAAACAAATAGAGAGTCTAGACGTAAATACTGATTTCTGGACAACTCCAGCTGTTCAACATTCTGTGACACCTGACGTTTTTCCAGTGAACTGGCCCACTTTTTCTCAGCCATCAGCCCCTTCACCCTACGACCAGCCAACGCTGGCTTCAAGGCATGATCGTAGCTTTAACTTTACATCGTCTTTGTTCGACCTTTCACCTGTAGCTTCCTCAACACCACATGTAGCAGTAGACACTAATGCGCTGTCCCAGCTATTCCCCTTCCCTACAATTCCCCGTTCCTCAGAGGTGCCACGTCCAGGATCTGCTGCTCCTACTATGCAGGCTATGAATTCTACAGCATACAATCCTTTTCTCCAGGATAAAACACAGACATCTGATCATCAAAGCAGTCCACACCCAGTGAAGCCATTGACACCTCCTGATGAGAAAAGGTCAGAGGGTCGCTCAGTACTAGAGAAGCTTAAATCCACCATTCACTCAGGACGAACAGGCCAGGATGCTGACAAGAAGCAGCTAGTGGAGGGAGGAGGCACGTACTATCACCTGAACCACAGCGAGCTGGTGAGTTTGCTGATCCAGCGGGATACTGAGCTCAGGCAGGAGCGGAAGGAGTACGAGAGGCGAGGGGCACTGCTGGAGAAGCGCGAGATGGAGCTAAAGAAGATGAAGGTCGTGATCAGAGATCTAGAGGATTACATCGACACGCTTCTTGTACGCATCATGGAGCAGACCCCCACGCTGCTGCAGGTCCGCACCAAGATGAAATGATACAACTAACGCCTCCACTATCCCTCCACGAATCCGGGGCGGACGTCACAACCCTGCACTGCTACAGCAACCATATAAATGTAGAGAGCTATCTGGCGCTAGGTGATGGGCATAGAGGAGATGGTGTAGATTTGGTGTTTTTAACGGTGACCAAAAGTACCTGGGCCTCTGCTGGGGTCCGTATGCACTGCAGGTTTGCGTTTGATGGTTAAAGGTCGGCACTCTGCTGCTAAACTTCAAAGCTGGTAGGATCCATTTTGACATGTGTCAGCTGATATTCACTCACTAGACACGTCACTAAGACACACGCCAGTCCAGCTATGTACCAAAACCACCTGTCAATCGAAAGGAAGGCATGACCGTGACGTGCCAGTCTTCTAGTTGCTAGTGTGAATGGTTTTTAATGCACGGTGAAAAACATCGATTTATCTTTTGTTTCTTCTATCACGTTTTTTCTGAACATGTACCGCTCAGCTGCTTGAACCGAGAACAAAAGAGCGAGTTTGAGATCACTCGAAAGTGTGCGAGAGGGAGCGTGAGACGTAGAAAGCAGGAAAGCGTTTTCGAATCTGCTTGTGCCTCCCTTACATGTCTTCCGCACTTTACATAAGAGCTTAAGGGTAGAGAGGCCCACACCAGCTGACCTTCTCGCCTTCGGTTTGTAGGTCAGCGTCCTTCCTCTCCCTTCCTTTGCTTGAGCCAATGCACGTACATCGCTGCCAGTGCTTTCAGGTGTAATGAATGGGATATATACTGTATTCATTGCATATATGCCACTCTGACAAAATGCCAAATGCTGCCTTATCATACAGtattttctccattctgttcTCGCTGAACTCATCCCTTTTTAATTAGATCGCACATTATATAACAAAACTAATGGCGGAGGAGTGTTTCAAGGTAAACTTTCCCACGACTGTTAGGTATCAAGACGAACAAATGGATCCGAAGAGAGAACGAAAGCCATGAAAACAGCAAATGCCAGAAACGATTTGCTCTAAATTTAACGTTACAGTATTCTCAATACCGCAACGGCTCTGTTAATGTTACTGTAATGTAATTCTGGTGTTTCTATGATGTCGCCACTATCGGTGTTGCCACTGTCTGTGTACAATGTAGCACTATATGTAGATGTGTGATAGAGGCGTAGGCCGCAGCACTTTTAAACCTCGCACCGAGGCATTTACAACCGTTCTTTCTCAACAGCTTAGGAAGTGCACGTAGTCAAACGCACACGTTCACTGCACAAACGAATCCTCCTCGAAACGCAGGATATACACGGTGTTTCAGTGCTAGCCCCTGCTAGGAAGCTCGAGATCTATCAATAACATATTTCTGAGTAGAAGCACTTAAGGACTCGTGCGCTCGGGACTGTTGAAGGTGGATTAAtgaatgttcatttattatggCTTAATGTAAAAGtttacaatttttcaaaaatgcgtTGCATTTTAATCATGCGAACATCTATTTATGttgttggttgtttttttttgctttgtggcCAGGTCTTTCGCCACCTTTTCTCACGGGTGGTCTGAAGGTCTGCACAATCCGTtcgtttattttctcatttctttcaaaGCTGTTGGTGTACGTTGTGATTTATTAAGGTCAGTAGTAACAGAAAGCAATAGATGTGTGAAGGCCAGGCTTTTGCAGAAATTAAGAGATTCATACTTTTTTAGGCCTAAACAGATGGAATGTAATATGAAATGTGTGCTTATAGGTTGCCACTGTGTTGAACAgcagtttatataaatactcactaacacacacatacacaacacacacacacacacacacacacacagcctgcaGCCTAGTAAGAAGGTGTGTTCAAGTGCCCTTGGCTGAATGTTATCATGAGATGTCATGAGATGTGTGTGTAGAAGAAGATTTGTATGCTTTTAATGGTGAAGATGATAatcaaagctacattttatGTAGTACAAACTCTGGAACTTGCAAATAAAAACTTGTGTTTACTATactacatttcattttattttttagaagtctgtaatgtctttttttttccttttaaggTCATTTAAAAcctagatatttttttaaagaattgcaaagggtttattttaaagttgtagGAATGCATCGGTAAGCGGCTTGATGCCCGAATCGTCATTCTTAAGACTATAGGCTCAACTCTTCCTCCTTTGGTGTGAATTTCAGTGGATTCCTGTCACGATCAAAATAAGAGTGGCTTAAATTCACCTCACGTATCAAGTAGCATTTAAGCACCAAACGCGATGGATGTGTTCAGTGGAACCATTTGTTTTAGGTGCAAAATATTTGAAGTGCTTCCCCGAGGTGCCGTTTGATTGGGTGTTCAGGGTGTAGTAACTTGAGTGCCCACTGGAGGTTGTGTTGTATACTTTTTATCAAATGCCTCATCTGAGAGATGTTCAACTGACTTTTGGTGTGCTCTTAGGCATCTCTGCTAAAGAAAAGGTCTCTGTTGATGAAATAAACTTTTCACTTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134605 lncRNA upstream 141616 5035359 ~ 5036116 (+) True G90905
TU134562 lncRNA upstream 164070 5003410 ~ 5013662 (+) True G90879
TU134586 lncRNA upstream 212717 4964702 ~ 4965015 (+) True G90888
TU134323 lncRNA upstream 481890 4625603 ~ 4695842 (+) False si:ch211-250c4.5
TU134314 lncRNA upstream 552188 4583808 ~ 4625544 (+) False si:ch211-250c4.5
TU134687 lncRNA downstream 72197 5270601 ~ 5271199 (+) False ap5s1
TU134692 lncRNA downstream 199091 5397495 ~ 5435571 (+) False G90957
TU134690 lncRNA downstream 235178 5433582 ~ 5435571 (+) True G90957
TU134737 lncRNA downstream 303238 5501642 ~ 5505510 (+) True G90985
TU134758 lncRNA downstream 325341 5523745 ~ 5525112 (+) True G90997
XM_043255853.1 mRNA upstream 41502 5132489 ~ 5136230 (+) True LOC122356791
XM_043255724.1 mRNA upstream 46285 5129847 ~ 5131447 (+) True mrps26
XM_043255723.1 mRNA upstream 48875 5125547 ~ 5128857 (+) True si:dkey-33c12.3
XM_043255719.1 mRNA upstream 52340 5118958 ~ 5125392 (+) True LOC122356713
XM_043255102.1 mRNA downstream 470 5198874 ~ 5212864 (+) True sfxn5a
XM_043255101.1 mRNA downstream 471 5198875 ~ 5212513 (+) False sfxn5a
XM_043255100.1 mRNA downstream 474 5198878 ~ 5212513 (+) False sfxn5a
XM_043255099.1 mRNA downstream 478 5198882 ~ 5212513 (+) False sfxn5a
XM_043254582.1 mRNA downstream 54497 5252901 ~ 5259209 (+) True cdc25b
TU134595 other upstream 179836 4992327 ~ 4997896 (+) False si:ch73-49p17.1
TU134239 other upstream 933691 4182499 ~ 4244041 (+) False G90660
TU134245 other upstream 933691 4182499 ~ 4244041 (+) False G90660
TU134242 other upstream 933691 4241132 ~ 4244041 (+) True G90660
unassigned_transcript_1924 other upstream 1105833 4071806 ~ 4071899 (+) True trnai-uau_4
unassigned_transcript_1926 other downstream 1933022 7131426 ~ 7131496 (+) True trnag-gcc_68
TU135767 other downstream 2637786 7836190 ~ 7838941 (+) False chchd1
XR_006252298.1 other downstream 2660294 7858698 ~ 7881483 (+) False zswim8
TU135961 other downstream 3108082 8306486 ~ 8310824 (+) True G91833
XR_006252358.1 other downstream 3467864 8666268 ~ 8683052 (+) False pcnx2

Expression Profile